RNA id: XM_021588336.2


Basic Information

Item Value
RNA id XM_021588336.2
length 3632
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110507915
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29107795 ~ 29166562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGAACTCCGCTCAGGCGTTTCTTTTACCCCTGCTAAATTAGGTTGCTTaataacttttattttgaaaatgtgATGTATGATTACATGACCTAGATGTCGCTGGGTTCACAACGCTCACGGATTGTTGGAAAGTGGCAATAATGGTAACGCTAAAGACAACTTTTACGAAAATGTGTGGTTTTTAATGTAGGCCCACGACAAGATAGTGCTGCCTCTGAGTTCGAGTGGAGTTAGGCCACACGAGGAGAACATGTATTTATGATGTCGAGGTAGGCATTCTATATCACTTTATTGATTAACATTCAGACTTCAACGATTGGCCCGTGACAATGTTGTCCAGCGTCTGGTTACATTATTGAGAAAATCATGTCTTAGTAAAGTCACGCGAACTGATTTTTGCTTCTACGTTTGGGAGTGAACTCTAGAAACTAGTTTAGTTGATAAAGTCGAAACAATTGGTGGCAGGGTGTTCTGAAGTTCTGGCTAGTCCTAGTAGCCAACAGCAGCTTCGCCATGTCGGAGAGGACACCGCTCCTGCACTATCGTCTCTCCACAAGCGTCAATGAGCAGTCGGGGGAGCATCATGCATGTCTGTCTGGGGAGACTGTGGAGCAGTCCCTGGCTTTTTCCAGACTGAAGTCGGCGCACCACAGTCGTCCCAAAAAACTCTCCACATTCTTTGGGGTGGTGATACCCACCTTACTGTCTATGTTCAGCGTGGTGGTCTTCCTACGAATTGGTTTCGTGGTGGGCCAGTGTGGGCTGTATCAGGCCATAGCCATGTTCTTAGTGGCCTACTTCATCATCAGTATGACCgtgctgtctgtgtgtgccaTCTCAACCAATGGAGCCCTGGACGCAGGAGGGGCCTACTACATGATAAGTCGTGCATTAGGGCCAGAGTTTGGGGGCAGTCTAGGTGTTATGTTCTTCCTGGCTAATGTGTGTAGCAGTGCCCTCTATATACTGGGTCTGGTTGAGGCCATAGTAGCAACTTTCGGGCTTCCAGAAGATGGGGTGAGCCCAGCGGGTTCCCTCCAGGTGTTGCCAGCTGGGTATTGGTGGTCGTTGCTCTATGCCACCGgcatcctcctcctctgcctgcttGTGTGTCTGGTGGGGGCAGAGATCTATGCCAAGGCCTCCTTCCTCATCTTCCTGGTGGTCATGATTGTGCTGGCCAGCATCTTCATCAGCTTCTTCGCCATGCGCCCGCGTACCATCCTCCTGCCTGCCGCCCTGCCCGTCCACAACAACACAGGGCCACAGCCACCCAACATGGCCAACTTTACCGGCTTTAAACTGGACACACTGCTGGGAAACCTGGATGCTGACTATGCTGTGGACTACACAACAGGAACCATGATGTCCTTTGCCACGGTGTTTGCGGTCATGTTTAACGGTTGCACAGGCATCATGGCCGGATCCAACATGTCAGGTGACCTAAAGAACCCTAGCTACTCTATCCCTCGAGGAACCATCACAGCTGTCATCTTCACCTTCATCATCTACAACCTCCTCAGTCTGATGGTGGCCTGCTCCTGTGAccgtaTTCTCCTCCAGAGGGACTACAGTTTCCTGCGGGACATTAATGTGTGGAACCCGTTGGTGACCGTTGGTGTGTACTCCTCCACCATGTCTGCTGCCATGAGTAACCTGATAGGGGCCTCTCGCATCCTCTTCGCCCTGGCACGGGACGACCTGTTTGGCACGGTGTTGTCTCCAGCTAAGAAGACATCTCACAATGGGAACCCCTGggtgtctgtcctcctctcctggtTCCTAGTACAGTTGGTGTTGTTCACAGGGAAGTTGAACACCATCGCCAGCATTGTAACCATCTTCTTCCTGCTGGTGTACGCAGCTGTAGACCTGGCCTGTCTGGCTCTGGAGTGGGCCTCAGCTCCTAACTTCAggcCCACCTTCCGTTACTTCACCTGGCACACCTGTGTGCTGGGCATCGTGGGCTGTGCTATCATGATGTTCCTGATCAACGCTATCTACGCCTCAGCCTCCATCGCCTTCATGCTGCTTCTACTGCTGCTCATCCACTACCTCAGCCCTACCAGCAGCTGGGGCTATATCAGCCAGGCTCTCATCTTCCACCAGGTGCGTAAGTACCTGTTGATGTTGGACGTGCGTAAGGACCATGTGAAGTTCTGGAGACCCCAGCTGTTGCTGATGGTGTCTAACCCTCGTAGCAGTGTAGGTCTCATCACCTTCATCAACGACATCAAGAAGAGTGGTCTCTATGTCCTGGGACATGTACAGCTGGGAGACCTGGACACGTTACCGTCCAACCCTCTCCAGTGCCGTTATGACTCATGGTTGTCTCTGGTGGACCACCTCAACATCAAGGCATTTGTCAACCTCACCCTGGCTGACTCAGTACGGCACGGAGTGCAACATCTACTCTTCATCTCTGGCCTAGgtgGGATGAGGCCCAACACATTGGTCCTGGGTTTCTATGATGACTGCACTCCCAAAGACAAACTCACTGACCCCGCCCTCACTGCCACCGTCCCCACTCAGGACCCCGAGGACGAACGCCCGCCCTACCACTTCCCCGCCCTGCGGCCTTCCAATGATGGTATGGGGGAAAACGGAAAAGTCATGGGACCCCAAGAATACGTGGCGGTGATCGCAGATGCCATGAAGATGATGAAGAATGTAGCGCTAGCCCGCTACTTCCACCAGTTCGACCGGGCCTCAACCATCTCCTCGTCCCCAGGGAAGGGTGCTCTGTACGTGGATGTGTGGCCCGTCAACCTGCTGAGACCAGACAGCTCCAGCTATGTAGACACCTGCTCCCTCTTCCTGCTCCAGCTTGCCTGCGTCCTCAACATGGTCCGCGCGTGGCGCCATGCTAGACTCCGCCTCTTTCTATGTGTGGAGGAAGGGCGGAGCCTGCGAGGCGCTGAGGAAAAGCTGGGTCAGCTGCTGAAGGAACTGAGGATCAAAGCCAATGTGTACACTGTGCCCTGGGACCAGCAGGTGGCGCTACACTGGCAGAGGCAGGGTGAGGCGGGCAAGAGGAGACCCACCCGCCagtcacagagagaggaggaggggctgGGGAAGAGGGGGTTGTttgaggagaaggaaggagacaACGGCGACTTTGTGAATAGCTTCCCTAGCAACGCCACAAGGCTGTCGGATGAGTATCTGTTGGCGGTTAATAGGTTGATCCTGGATCAGGCCTGCCCCCCTCCGGCCGTGCGTTTCCTGTATTTGCCCCACCCCCCGGCTGACACGCAGCACTACACGGCCTACCTCCGCCAGCTAGACCTGCTCACCAAGGACCTGGGTCCTACCCTGCTCATACACGGGGTTACACCTGTCCTCACCACTGACCTCTAACACCTGAACTCTCACCAACTGATCCCTGATTAAACCCTCATCCCTTTACCAAATTGCTGCAGGTAGAAGTGCTACTCAAGCTCAAGGATCCACTTACCTGCCCCAAAGCTGTActaatatacaaaagtatgtggacaccccttcaaataagtggatttggctatttcagccatgcTTGTTGTTGacatgtgtataaaatcgagcacacagccatgcaatctccatacacaaacaggcagtagaatggcccgtactgaagagatcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2368423 lncRNA downstream 49128 29058290 ~ 29058667 (-) True G2071316
TU2368416 lncRNA downstream 55097 29052490 ~ 29052698 (-) True G2071309
TU2368405 lncRNA downstream 66049 29041535 ~ 29041746 (-) True G2071298
TU2368352 lncRNA downstream 163266 28940764 ~ 28944529 (-) True G2071250
TU2368625 lncRNA upstream 10073 29176635 ~ 29280698 (-) True G2071506
TU2368678 lncRNA upstream 101035 29267597 ~ 29274444 (-) False G2071557
TU2368679 lncRNA upstream 107256 29273818 ~ 29274444 (-) True G2071557
TU2368682 lncRNA upstream 112530 29279092 ~ 29285134 (-) True LOC110507265
TU2368713 lncRNA upstream 143230 29309792 ~ 29310184 (-) True G2071588
XM_036965095.1 mRNA downstream 103588 28971334 ~ 29004207 (-) False LOC110507149
XM_036965096.1 mRNA downstream 103588 28971334 ~ 29004207 (-) True LOC110507149
LOC110507148 mRNA downstream 172136 28933760 ~ 28935659 (-) True LOC110507148
XM_021587151.2 mRNA downstream 201532 28903769 ~ 28906263 (-) True LOC110507264
XM_036965394.1 mRNA downstream 210457 28863097 ~ 28897338 (-) True LOC110507911
XM_021587004.2 mRNA upstream 14062 29180624 ~ 29186077 (-) True LOC110507150
XM_036965627.1 mRNA upstream 51303 29217865 ~ 29251545 (-) True LOC110507151
XR_002471095.2 mRNA upstream 111433 29277995 ~ 29285413 (-) False LOC110507265
XM_036965265.1 mRNA upstream 462876 29629438 ~ 29650602 (-) False zgc:165508
XM_036965266.1 mRNA upstream 462876 29629438 ~ 29651489 (-) False zgc:165508
TU2368344 other downstream 165067 28941354 ~ 28942728 (-) False G2071247
TU2367763 other downstream 583245 28523946 ~ 28524550 (-) True G2070744
TU2367516 other downstream 935253 28170838 ~ 28172542 (-) True G2070530
TU2367316 other downstream 1218437 27872709 ~ 27889358 (-) True LOC118944653
TU2367315 other downstream 1237700 27869224 ~ 27870095 (-) True LOC118944698
TU2369096 other upstream 465350 29631912 ~ 29651467 (-) False zgc:165508
TU2369097 other upstream 465350 29631912 ~ 29650545 (-) False zgc:165508
TU2369099 other upstream 465432 29631994 ~ 29651467 (-) True zgc:165508
TU2369518 other upstream 663540 29830102 ~ 29831709 (-) True G2072288
TU2370034 other upstream 1229213 30395775 ~ 30396680 (-) True G2072732

Expression Profile