RNA id: XM_036965804.1


Basic Information

Item Value
RNA id XM_036965804.1
length 2430
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110507210
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35169232 ~ 35330617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCTTCCGTGCTGGCTGTAGACGCTCCTCACCACTGGCgagttgttctctctgtcttttccttcTCGCGCTCTCTTCCACCCATCTTGCATGTGCTCAGTTTAGTGTTTACCGAGCCGGACAGAGCTTTCTCCAGCGGTAGCGGACACTGCGGGGGAACAAAACCACTATGGATTGCTAAAACTCGGGCTTATTTTTCTcttttcccaccttctctctcgccttgtttcctcctcctccatgtctctccacaGTTTTTAAGGGACGGAAAATGAGGATTATTTACCCGCACTTTGTCGGGGTGTTTTCCGCCCTTTGGGGGCTAGCGACTGGGGCTTTCCCCAGCAGTGTTCAAATAGGTGGTCTATTTATCAGGAACACAGATCAGGAGTACACAGCATTTCGACTGGCTATCTTCCTGCACAACACCAGCCCCAATGCCACGGAGGCTCCATTCAACCTTGTACCCCATGTCGACAACATTGAGACAGCTAACAGCTTCGCCGTCACAAATGCCTtctgTTCGCAGTACTCGCGGGGTGTGTTTGCTATCTTCGGCCTGTACGACAAGCGTTCGGTGCACACCCTGACGTCGTTCTGCAGCGCTCTGCACATCTCCCTGGTCACGCCCAGTTTCCCCACGGAGGGGGAGGGCCAGTTCACCCTGCAGCTCCGCCCCTCTATCAGAGGAGCTCTGCTGTCCCTGCTGGACCACTACGACTGGAGTCGATTCGTATTCCTCTACGACACAGACAGAGGTTATGCCATCCTACAGGCAATCATGGAGCGAGCAGGTCAAAACGGTTGGCAGGTGAGTGCCATCTGCGTGGAGAGTTTCAACGAGGCAGCGTACCGTCGTCTGCTAGAAGACCTGGACCGCCGGCAGGAGAGGAAGTATGTCATCGACCTGGAGCCTGAGAGACTGCAAAGCATTCTAGAACAGGCTGTTAGTGTGGGGAAACATGTCAAAGGCTACCATTACATCTTGGCCAACCTGggtTTTAAAGACATATCTCTAGAGAGATTTATGCATGGTGGGGCTAACATCACAGGGTTCCAGTTGGTTGACTTCAGTAAGCCAATAGTCCTCAAACTGATGCAGCGCTGGAACAAACTGGACCAGAGAGAGTACCCAGGCTCTGACATCCCacccaagtacACCTCGTCTCTGACGTATGACGGGGTGTTGGTGATGGCCGAGGCCTTCAGGAACCTGCGTCGTCAGAAGATAGACATCTCCCGTAGAGGAAATGCTGGAGACTGTCTGGCCAACCCAGCTGCTCCCTGGAACCAGGGCATAGACATGGAACGCACACTCAAACAGGTGCGTATCCAGGGTCTAACAGGTAACATACAGTTTGACCACTACGGCCGCAGAGTCAACTACACCATGGACATGTTTGAACTGAAGAGCAACGAACCACAACGGATTGGCTACTGGAACGACATTGACAAACTGGTTCTGGTCCAGAATGAGGTGCTGTTGTCTAACGACAGCACAAACATTGAGAACAGGACAGTCGTTGTGACAACTATCATGCCACTGACGAGGAAGCCTCTGCTACGACACTGAAGACTTACAGTACAGACAGAAACACTGACAGACGGGAGATGGACTCACAGAAggactcacactgacagacagagccACTGAGACTCTAGGTCTCTATCGCTCTGTAATTATATAGCAGCGGCATTGAGAGAAGAGGAATCACACAGATGAAGAtacctatctatctatccatctgtcTGTAATTCTGCTTTGTCATGACTTGACTTTTTCTTCTCTGTGAACTGGGGGAACTgtagacaaaaaaaaaagttttaatatTTTTGGGATTATCGTTTTGGATGTTCAGGGAATTAGAATGGAATTGTGTCCCAAAATGCTGAGAAAAAGACTCCCACAGATCAGACAGCGGCCAGTCGTACAGAATCACACACAGATCAGACAGCGGCCAgtcatacagaaacacacacaaatcagACAGACGGCCAGTCGTATagaaacacacccacacagagtgcatatatactgtcacacacacattcacacactgcGTACTGTCTCACAgatgcatacacaaacacacccccaaCACACTGACATAATCACAGTCTCAAACAAACACACCCTGACAGTCACAAAAACACAATCTCAAAGTGTGGCTGTATTTAATATTCCTTCACCATGACATGACATCACATGTCCTCACGCCCCCTGCAGATAGCAGCTTTAGTCATTCTGTTTCTATGGTGTTCTCTGAAGACTGCATCAGAGACTGTGCATTGACACAGCGAGAGGCTGCTGTTACTTCATGGTCTCCCATCCATCTACATTGTTCTattctacagtggcttgcgaaagtattcacccccttggcatttttcctatttttttgcctgacaacctggaattaaaaaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375662 lncRNA downstream 41631 35203729 ~ 35207248 (-) True G2077819
TU2375652 lncRNA downstream 71523 35169376 ~ 35177356 (-) True LOC110507210
TU2375434 lncRNA downstream 84444 35160746 ~ 35164435 (-) True G2077636
TU2375433 lncRNA downstream 89618 35159019 ~ 35159261 (-) True G2077635
TU2375431 lncRNA downstream 91095 35157252 ~ 35157784 (-) True G2077633
TU2375739 lncRNA upstream 20763 35351380 ~ 35353524 (-) True G2077892
TU2375767 lncRNA upstream 69320 35399937 ~ 35400178 (-) True G2077917
TU2375781 lncRNA upstream 95649 35426266 ~ 35429747 (-) True G2077929
TU2375785 lncRNA upstream 102487 35433104 ~ 35433361 (-) True G2077932
TU2375788 lncRNA upstream 104639 35435256 ~ 35435515 (-) True G2077935
XM_021587096.2 mRNA downstream 349471 34898581 ~ 34899408 (-) True LOC110507205
LOC110507204 mRNA downstream 354196 34886462 ~ 34894683 (-) True LOC110507204
XM_021587095.2 mRNA downstream 379623 34866113 ~ 34869256 (-) True LOC110507202
XM_021587093.2 mRNA downstream 397137 34850844 ~ 34851742 (-) True LOC110507200
XM_021587152.2 mRNA downstream 404342 34842114 ~ 34844537 (-) True LOC110507267
XR_002471097.2 mRNA upstream 452876 35783493 ~ 35787697 (-) True LOC110507269
XM_021588406.2 mRNA upstream 745526 36076143 ~ 36107044 (-) True LOC110507979
LOC110507212 mRNA upstream 777099 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 802120 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 802120 36132737 ~ 36264360 (-) False LOC110507213
TU2375411 other downstream 94836 35116382 ~ 35154043 (-) True G2077617
TU2373899 other downstream 2367991 32878789 ~ 32880888 (-) True G2076236
TU2371806 other downstream 3220912 32027628 ~ 32027967 (-) True G2074300
TU2370034 other downstream 4852199 30395775 ~ 30396680 (-) True G2072732
TU2369518 other downstream 5417170 29830102 ~ 29831709 (-) True G2072288
TU2375787 other upstream 104257 35434874 ~ 35435212 (-) True G2077934
TU2375789 other upstream 104977 35435594 ~ 35436257 (-) True G2077936
TU2376010 other upstream 396239 35726856 ~ 35727482 (-) True G2078119
TU2376118 other upstream 496499 35827116 ~ 35827711 (-) True G2078218
TU2376170 other upstream 528285 35858902 ~ 35863277 (-) False G2078260

Expression Profile