RNA id: XR_002471097.2



Basic Information


Item Value
RNA id XR_002471097.2
length 423
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110507269
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35783493 ~ 35787697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGACACCTGTCTCAATCAATGAGAGAAGATTTGAAATAGACATGATGGGAGCATACATATTGTTGGATTACTTCACAgatcaaaacatttatttattttaaataacgCAAACGCACCACCTGCAACAGGACCCAAATCGAGAACAAACACATTATCACCAAGTTAAGGACTACAGTGGTCTGGCTGGTGTGTCTGGCTAACGCTGTGGAGCTGGTGGGGGTGAGCAGAGACAGCTGGGATGACGTATGGAGGCAGAATGACCATGATCCCTTTCCTGAGACACACATGCTCAGACTCATGGATGTCATTgTTTGGAAATGGTAGACTTTATCTCAGTGAACTGTGAGCCAGTGAAGGCAATGATTGATGACCTCATTCAGAGACTGTTTGACGCCCTGCAGATATCCCTCATGATCTCCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2376060 lncRNA downstream 23292 35759985 ~ 35760201 (-) True G2078163
TU2376053 lncRNA downstream 29011 35754242 ~ 35754482 (-) False G2078156
TU2376051 lncRNA downstream 29011 35754254 ~ 35754482 (-) True G2078156
TU2376031 lncRNA downstream 42160 35741089 ~ 35741333 (-) True G2078136
TU2376015 lncRNA downstream 52771 35730504 ~ 35730722 (-) True G2078124
TU2376102 lncRNA upstream 12962 35800659 ~ 35800898 (-) True G2078202
TU2376120 lncRNA upstream 41967 35829664 ~ 35829969 (-) True G2078220
TU2376129 lncRNA upstream 44756 35832453 ~ 35832728 (-) True G2078229
TU2376142 lncRNA upstream 53811 35841508 ~ 35855235 (-) True G2078241
TU2376144 lncRNA upstream 57536 35845233 ~ 35850952 (-) False G2078242
XM_036965804.1 mRNA downstream 452876 35248879 ~ 35330617 (-) False LOC110507210
XM_036965796.1 mRNA downstream 452879 35169232 ~ 35330614 (-) False LOC110507210
XM_036965797.1 mRNA downstream 452879 35169232 ~ 35330614 (-) False LOC110507210
XM_036965801.1 mRNA downstream 452879 35169232 ~ 35330614 (-) False LOC110507210
XM_036965798.1 mRNA downstream 452879 35171163 ~ 35330614 (-) False LOC110507210
XM_021588406.2 mRNA upstream 288446 36076143 ~ 36107044 (-) True LOC110507979
LOC110507212 mRNA upstream 320019 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 345040 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 345040 36132737 ~ 36264360 (-) False LOC110507213
XM_036965288.1 mRNA upstream 507353 36295050 ~ 36364517 (-) False LOC110508009
TU2376010 other downstream 56011 35726856 ~ 35727482 (-) True G2078119
TU2375789 other downstream 347236 35435594 ~ 35436257 (-) True G2077936
TU2375787 other downstream 348281 35434874 ~ 35435212 (-) True G2077934
TU2375411 other downstream 629450 35116382 ~ 35154043 (-) True G2077617
TU2373899 other downstream 2902605 32878789 ~ 32880888 (-) True G2076236
TU2376118 other upstream 39419 35827116 ~ 35827711 (-) True G2078218
TU2376170 other upstream 71205 35858902 ~ 35863277 (-) False G2078260
TU2376169 other upstream 75056 35862753 ~ 35866253 (-) True G2078260
TU2376173 other upstream 85605 35873302 ~ 35876648 (-) False G2078263
TU2376174 other upstream 86727 35874424 ~ 35876648 (-) True G2078263

Expression Profile