RNA id: XM_021588406.2


Basic Information

Item Value
RNA id XM_021588406.2
length 1058
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110507979
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36076143 ~ 36107044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGGTCTTGCAAATCCTTTTCCTGGAGTTGCACAACTAACTCAGATATTTGGAGAGGAACAAACTCAAGGAGAGACTTCAGTCTTCAGATGGGGTAGCCCAGCCCCACGCGCTCACGTCTCTGACCTCGCGCTGAGCCCGGCGAGTCACAAGGTCCCGATGTTCACTTTTCTTCCCCACTTCTCTGGGCGTTCCTTCCGGATCGTTAGCGCGCACCGCTCCTCATTCTCGCGCCttatcttctccccctctcccctcactgCGTATTAATGCTCTACCGTAGCGCTCCGCGGTCGCCATGCAGAACAACTACAAGGAGCACCTCTATAAGATCCTGGTAATAGGGGACCTGGGGGTGGGGAAGACTAGCATCATCAAGCGCTATGTTCACCAGAACTTCAGCCCCAACTACCGGGCCACGATAGGAGTGGACTTCGCCCTGAAGGTCCTTAATTGGGACCAAGAGACTGTTCGGCTACAGTTATGGGACATAGCAGgtcaggaGCGATTTGGGAACATGACGAGGGTCTACTACCGTGAAGCCATGGGGGCGTTCATTGTTTTTGACATGACGCGGCCTTCCTCCTTCGAGGCTGTCACCAAGTGGAAGGAGGACCTGGACTCTAAACTTACACTGGCCAATGGGAAAAATGTGGCCGCTGTGCTATTGGCTAATAAGTGCGACCAGGGGCGGGACGTGCTAACCAACAACGGGATCCAGATGGAGAAGTTCTGTCAGGAGAATGGCTTTGTGGGATGGTACGAGACCTCTGCCAAGgAGAATATGAATATAGATGAAGCAGCTAACTGTCTGGTGAAGCACATCATCGCCAACGAGAATGATATCCTCCAATCAGAAGTCCCTGACACCGTCTCTCCGCAATTAAACTCTGTCAGGGGTGGGACCTGCTCCTCCTGTTTCAAATCATagaacaccatcactacacaccaccaccatcactacacaccaccaccatcactacacaccaccaccatcactacacaccaccaccatcactacacaccaccaccatcactacacaccaccaccatcac

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07923 RAB38; Ras-related protein Rab-38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376637 lncRNA downstream 1667 36073994 ~ 36074476 (-) True G2078632
TU2376636 lncRNA downstream 2325 36073633 ~ 36073818 (-) True G2078631
TU2376635 lncRNA downstream 2409 36073246 ~ 36073734 (-) False G2078631
TU2376316 lncRNA downstream 29558 36016418 ~ 36046585 (-) True G2078389
TU2376322 lncRNA downstream 41584 36034243 ~ 36034559 (-) True G2078395
TU2376649 lncRNA upstream 6815 36113859 ~ 36114222 (-) True G2078642
TU2376651 lncRNA upstream 12233 36119277 ~ 36119757 (-) True G2078644
TU2376655 lncRNA upstream 17242 36124286 ~ 36129306 (-) True G2078647
TU2376656 lncRNA upstream 22418 36129462 ~ 36131773 (-) False LOC110507213
TU2376658 lncRNA upstream 23574 36130618 ~ 36133065 (-) False LOC110507213
XR_002471097.2 mRNA downstream 288446 35783493 ~ 35787697 (-) True LOC110507269
XM_036965804.1 mRNA downstream 745526 35248879 ~ 35330617 (-) False LOC110507210
XM_036965799.1 mRNA downstream 745529 35171163 ~ 35330614 (-) False LOC110507210
LOC110507212 mRNA upstream 672 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 25693 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 25693 36132737 ~ 36264360 (-) False LOC110507213
XM_036965288.1 mRNA upstream 188006 36295050 ~ 36364517 (-) False LOC110508009
XR_005040026.1 mRNA upstream 288968 36396012 ~ 36423381 (-) False nlrc3l
TU2376173 other downstream 199495 35873302 ~ 35876648 (-) False G2078263
TU2376174 other downstream 199495 35874424 ~ 35876648 (-) True G2078263
TU2376169 other downstream 209890 35862753 ~ 35866253 (-) True G2078260
TU2376170 other downstream 212866 35858902 ~ 35863277 (-) False G2078260
TU2376118 other downstream 248432 35827116 ~ 35827711 (-) True G2078218
TU2376662 other upstream 147552 36254596 ~ 36264270 (-) True LOC110507213
TU2376791 other upstream 276141 36383185 ~ 36389384 (-) True G2078753
TU2376880 other upstream 417956 36525000 ~ 36525640 (-) False G2078826
TU2377448 other upstream 687724 36794768 ~ 36861357 (-) True G2079261
TU2377502 other upstream 815218 36922262 ~ 36928132 (-) True G2079301

Expression Profile