RNA id: XR_005040079.1


Basic Information

Item Value
RNA id XR_005040079.1
length 2659
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110507945
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36579045 ~ 36593650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctctctctatctctctctctctctctctctctctctctctctctctctttctctgtctacaGCGATCAGGAGGTAGGAGAATGGCTGGAATGATGAAGAACATCCCCTTGTCATCCTCTTCCTAGGCTCCTCTGGAATCGGGATTCATCTGTATGGACATGTCCGAATTCTAGGAGAAGCACGAGGTATGATATCATCAACACCACTTTCCCAAAACCAGGAAGATACTTCACATTCCCACAACCAGGAAGATACTTCATATTCCCAAAACCAGGAAGATACTTCACATTCCCACAACCAGGAAGAGACTTCATAGTCCCACAACCAGGAAGAGACTTCATATTCCCACAACCAGGAAGAGACTTCATGTTCCCACAACCAGGAAGAGACTTCATATTCCCAAAATCAGGAAGAGACTTCATATTCCCACAACCAGGAAGAGACTTCATGTTCCCACAACCAGGAAGAGACTTCATGTTCCCACAACCAGGAAGGTCATTGGGCTGGGATACATTACCTATctactgtagggccgtCTTACAGATGGCAAGGGGAAGACCATTGAGTGTAAGGACACCATCTTCATCATAACCTTGAGCGTGGCCAGTGACGACATCGCCCAGCATGGAGGCCCAGGAGCTCAGCCGCAGGAAACTGGCCGACAACctggATGAGGTTCAGAAGAGTGATGTCACCATCTCCAGGCAGTTTAAGGGTGCTGTGATTCGCCCCATACTGAAGGCCCATTTCCGGAGAGACGAGTTTCTGGGGCGGATCAATGAGATTGTCTACTTCCTGCCGTTCTGCCCCTCTGAACTGCAGCAGCTTGTCAGCAAAGAGCTCAACTTCTGAGAAGGTGGAGTGGGAGGTGGTCATCCAACTGACAGCGGCCTACGAGCAGGAGCGCCTCTCTAAAGGCTGCACCCTCCGCCTGTCTGTCCACACAGAGGACAGGGGCGGGGCCGGGGGGCAGGAAGGGAAGGGGCAGGGCATTATCAGTCTGCATCTGAAGGTAATTGGGAAGGACAGCACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACTAACACACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACTAACACACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACTAACACACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACTAACACACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACTAACACACAGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGatcactaacacactgcacaAATACTGGATATACACCCTCCTCTCAGCCCCGATCACTAACACACTGCACGGATACTGGATATACGCCCTCCTCTCAGCCCCGATCACAAACACACTGCGCGGACACTGGATATATGCCCTCCTCTCAACGTATCACCTCATAGTAACGTCTCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCATAGTAACGTATCACCTCATAGTAACGTCTCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACCTCGTAGTAACGTATCACTTCGTAGTAACGTATCACTTCATAGTAACGTATCACCTCGTAGCCATGAGTTGGTTTTCATGGAGCTAATTAGTCAATAAGGCCCaagagggtgtggtatatggccaatataccacggctaagggctgttcttatgcatgacgcaacatgaccatataccacaaaccccagaggagcgttattgctattataaactggttggttaccaatgtaattagaacagtaaacaagcCATTTTGTGTTatacccgtggtatattgtcTGAGGACAGGACCCAATCTACCCGGTTAATAATaagaattataaactgggtggtgcAAGCCatgaatgttgattggctgacagctgtgatTTGTGTGATGTCGGGGGTTTGTggaatatgaccaatataccacggctaagtgctgtatccaggcactccacattgagtcgtgcataagaacagcccttagccgtggtatattagctatataccacacctccttgggCCTTACTGCTTAAATAGAACCTCTCAGAAGAAACACATTGCACTGGCTGTCTGTTACTCTTCATACTGTatccacagcacacacacattggtTCTGAGTCATCTGAGTCATGTAAACGGTGACATTAGAAAGTAACTCAAGTTTATGGATGATAAATGATGGATATCAATAAACTGCCTCGTGAAATGTTTCAGTATAGTTGGATGCATTGCGGCCTTTGTCACAAAAATGTTTAGTGGTGTTCGGTGGGAATCAATCTGACATTGTAAAGATATGAATATTATTTAGACACTTTAATGTATCCTTCACGTTTACAAGGAGCCGAGCTAAAGAAGCAACACATTTTTCATTGTTGCATATGAACCCCCATCGTGTTGTAAATAAAGCTGCTGTGGTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376890 lncRNA downstream 8314 36539554 ~ 36570731 (-) True G2078834
TU2376896 lncRNA downstream 24112 36552783 ~ 36554933 (-) True LOC110507944
TU2376894 lncRNA downstream 36183 36541810 ~ 36542862 (-) True G2078836
TU2376888 lncRNA downstream 44369 36534051 ~ 36534676 (-) True G2078832
TU2376886 lncRNA downstream 48157 36528309 ~ 36530888 (-) True G2078830
TU2376952 lncRNA upstream 20948 36614598 ~ 36620652 (-) True G2078891
TU2376960 lncRNA upstream 27336 36620986 ~ 36622945 (-) True G2078895
TU2376964 lncRNA upstream 34860 36628510 ~ 36628737 (-) True G2078898
TU2376995 lncRNA upstream 75879 36669529 ~ 36669914 (-) True G2078927
TU2377000 lncRNA upstream 80431 36674081 ~ 36674350 (-) True G2078932
XM_036965243.1 mRNA downstream 18913 36552844 ~ 36560132 (-) False LOC110507944
XM_021588369.2 mRNA downstream 18914 36552845 ~ 36560131 (-) False LOC110507944
XM_021586902.2 mRNA downstream 132899 36442282 ~ 36446146 (-) False hs020
XM_036964603.1 mRNA downstream 132902 36442282 ~ 36446143 (-) False hs020
XM_021586901.2 mRNA downstream 132917 36442282 ~ 36446128 (-) False hs020
XR_005040016.1 mRNA upstream 257245 36850895 ~ 36851620 (-) True LOC118944723
XM_036965036.1 mRNA upstream 684044 37277694 ~ 37295837 (-) False cep57
XM_036964618.1 mRNA upstream 702777 37296427 ~ 37317519 (-) False LOC110508024
XM_036964619.1 mRNA upstream 703052 37296702 ~ 37314644 (-) False LOC110508024
XM_036964617.1 mRNA upstream 703052 37296702 ~ 37317519 (-) False LOC110508024
TU2376880 other downstream 53405 36525000 ~ 36525640 (-) False G2078826
TU2376791 other downstream 189661 36383185 ~ 36389384 (-) True G2078753
TU2376662 other downstream 314775 36254596 ~ 36264270 (-) True LOC110507213
TU2376644 other downstream 474904 36102700 ~ 36104141 (-) True G2078637
TU2376174 other downstream 702397 35874424 ~ 35876648 (-) True G2078263
TU2377448 other upstream 201118 36794768 ~ 36861357 (-) True G2079261
TU2377502 other upstream 328612 36922262 ~ 36928132 (-) True G2079301
TU2377644 other upstream 661232 37254882 ~ 37256026 (-) True G2079423
TU2377632 other upstream 679856 37273506 ~ 37276945 (-) True G2079412
TU2377664 other upstream 684051 37277701 ~ 37279647 (-) False cep57

Expression Profile