RNA id: TCONS_00005190


Basic Information

Item Value
RNA id TCONS_00005190
length 1096
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_002800
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26190807 ~ 26226228 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGACAGTATGATGAGTAAAGCCGCCACAATGGAGATTCCTATTAGCAGTAATGGGGACTCTCGAAATCTGGCAGAAGATGACAGTTTGGAGCAGGCTGCAAAGATTCAGTGGAGCTTAAGAGAGAAGGACTTGCAGCAGGTAATGGTGTCTGGGCCCAACTTAAATGAGACCAGCATCGTATCAGGTGGTTACGGCGGTACAACAGAAGGCATCATTCCAACCAGCTCCATCAAAGGGTCCAATATGGATTATGTCGGTAGCAATTCCTCAATGGCAGCAGAAGAAGCCACAAGAGGCGTTGCTGTGGAGAAATTTGACATAATGAAGAAATGGGGTCTGAACACATACAAGtgCACCAAACAAATGATCTCTGAGAGGTTTGGCCGAGGATCACGTACTGTGGATTTGGAGCTGGAGGCTCAGATTGAGGTTTTGCGGGAAACCAAACGGAAGTACGAGAATGTGCTGCGTTTAGCACGAGCGCTAACCAACCACTTTTACAGCATGGTGCAGACGCAACACGCCCTTGGAGACACTTTTGCCGACCTCAGTCAGAAGTCCCCAGAACTTCGGGATGAGTTTGGATACAATGCAGAAACGCAAAAGTTGTTGTGCAAGAATGGAGAGACTCTGCTTGGTGCCATCAATTTTTTTGTGTCCAGCATCAACACACTTGTGAACAAAACGATGGAAGACACACTGATGACTATCAAGATGTATGAGAATGCCAGGCTGGAGTTCGACGCGTACAGGGCAGATCTGGAGGAGTTGAACATGGGCCCACGGGACGCTGTTACTATGGCTCGTATCGAGGCTGCTCAGCAGCAGTACCAGATCCACAAGGACAAATATGAACGTCTCCGCAGTGATGtcaccatcaaaattaagttCCTAGAAGAAAATAAGGTCAAAGTGATGCACAAGCAACTTCTGCTGTTCCATAATGCCATCTCTGCCTACTTTGCTGGAAACCAGCAGCAGCTGGAACAGACCCTCAAGCAGTTCAACATTAAACTCAAACCACCAGGGGCCGACAAACCCTCTTGGCTGGAGGAACAGTGAAAGTGCTCCATTACCCCTGGTTTCCTGT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-131 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be active in trans-Golgi network membrane. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; mesoderm; and pronephric duct. Orthologous to human ARFIP2 (ADP ribosylation factor interacting protein 2).

Ensembl:

ensembl_id ENSDART00000180764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006054 lncRNA downstream 63486 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA downstream 63486 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00005171 lncRNA downstream 506724 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005764 lncRNA downstream 514413 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005763 lncRNA downstream 518865 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00006055 lncRNA upstream 222698 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006056 lncRNA upstream 222698 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006057 lncRNA upstream 618482 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005206 lncRNA upstream 674213 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006058 lncRNA upstream 682918 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00005185 mRNA downstream 3317 26190807 ~ 26202766 (-) False XLOC_002800
TCONS_00005186 mRNA downstream 9700 26190808 ~ 26196383 (-) False XLOC_002800
TCONS_00005181 mRNA downstream 26278 26129830 ~ 26179805 (-) False XLOC_002799
TCONS_00005182 mRNA downstream 42094 26130856 ~ 26163989 (-) False XLOC_002799
TCONS_00005179 mRNA downstream 345981 25829262 ~ 25860102 (-) False XLOC_002798
TCONS_00005192 mRNA upstream 50436 26268790 ~ 26430168 (-) False XLOC_002801
TCONS_00005193 mRNA upstream 50718 26269072 ~ 26273629 (-) False XLOC_002801
TCONS_00005194 mRNA upstream 51178 26269532 ~ 26274094 (-) True XLOC_002801
TCONS_00005195 mRNA upstream 283980 26502334 ~ 26512742 (-) False XLOC_002803
TCONS_00005197 mRNA upstream 286438 26504792 ~ 26512993 (-) False XLOC_002803
TCONS_00005187 other downstream 3560 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 65002 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 706609 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1750351 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1822702 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005203 other upstream 525242 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 787917 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 951602 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 1195892 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1980540 28198894 ~ 28199041 (-) False XLOC_002823

Expression Profile

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