RNA id: LOC110508094


Basic Information

Item Value
RNA id LOC110508094
length 2318
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110508094
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43535555 ~ 43549204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATCGTCGTTGCCTTGTTAACATTGACAATTGTAGGTGGCGTACATATAACATAGCTTTTAATGTACTAACGAACAGCTGTTCAACAAACTAACAACAAACGTATCCCAAGAGAAAGAAGGCGTGGGTATGATCTGCCTGGCCAGTGAAAggctgtgccccccccccccagtagctGTCACCACGGCGGGGGACATCAGGACCTCCATCTGCAGGGTGGTCATCTACCTTCAGAGGGACATGTCCGGGGACAGCTGCCAGCTCCCCCTGCACCGGCTATGCCTCCAAACCCAGGTCATCTCCACTGGCTCACAAGCCATTAGACCTTCCCATGAAGCCTCCCAGATGGCGTGTCCCAAGTCCAAGACGTGCAGCTACAGAGCGGCGTTGGGCCTGGGTAACAAGTATGTGCGTCTAAACGTAGGGGGGACCCTGTTCTACACCACGCTGCAGGTGCTCACCAGGCAGGACTCCGTGCTGAAGGCCATGTTCAGTGGCAGGAAGGAGGTCTTGATTGACAGAGAAGGCTGGATCCTGATAGATCGTTGTGGGTAGCACTTTACCTCCATCCTGATGTACCTGCGGGAGGAAGGAGGTCACCTTGCCCCCTGGCAGACAGGGGCCTCTAGAGCTGCTGGCAGAGACAAATCATTATCTCATCCAGGGTCTGGTGGAGCTGTGCCAGGGAGACTTGCAGGACCAGAAGGAGCAGTCTCTGTGTGTAATCCCTGTTGTCACCTCTGCCaaggaggaagagagactgaTCCAGGCCTACACCAAGCCTGTGGTAAAGCTGCTGTACAAAAGAAGCAACAACAAGTACTCCTATACAAGTAACTCAGACGACAACCTGTTGAAGAACATTGAGCTGTTTGACAAGCTGTCTCTGAGCTACAATGGCTGTGTTCTTTTCATCAAGGACGTGATCGGCGACGAGATCTGCTGCTGGTCGTTCTACGGACAGGGACGCAAACTGGCGGAGGTCTGCTGCACATCCATAGTCTACGCCACAGAGAAAAAACAGACCAAGGTGGAGTTTCCAGAGGCCAGGATCTACGAGGAGACCCTGAACGCTTTGCTTTATGAGACACTTCCTGTCCCTGACGACTCCCTATTGGAGGCCACACGCCGTCGACACGCCCACAGCCACACCCACTGTGGTTTCCACAGCAAGGAGGAGGAAGGCCCCACCCACTCTGGGctgttcgtgcacacacacaaacaaacaacaaaatcCGTGAGGCAAGTCGAAATCTGTAGCTGAAGTCTGCCCCTTtttgtcggtgattggtcaacagcagggattcttcaatgaagtgttttttttattgtcgTTCAACAAGAGACGACTAGTTTTCATGCCCATTTTTttccacttgagaaatactgcaccaaacctcttagttagatgtaaaattgcgcgtCTAAGATCTCTGCAAAACGttaaaatgaatgacagatttcaTAAGTTATCTCAGatgaattctgactattttgaggaagtgtattctggctacggcatctcaatatagacaaacagtactattgacactttttttcacatttttcaAGGGAGTATGTGAGCACACTTGTTTGCCTACGGCTAGGCGCCAGCCGAACTGTAGCTAGCCGACGCCTTAAGGATGTGTCCCATCTAACCACAGAGGAGGAAACTGGTCCCCGCTGGCTCTTCACTTAATCACTACACCCACCACTGAAGCACTGGTGGTGTTGGCCCCAAAATGGCCTTgggcacaaaatggctgccaagCTGCATCACCCTGGTGCCTGACagactttgttgatggaaaactTGTGATTTAAAATGTTGAGGTGCTTATGCTGTTTCTTCTTTGTTTTATATAGAACTCTCTTCTTCACAAAACAATCAAATCTGTGTTCATACAATCAAAATTTGCAACTTCAAATCAGTGAAGGTGAAGGGGGAGAAGACCggttaaagatggatttttaaaccttgacacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaatattgaagtgcctttgaacggggtatggtagcaggtgccaggcccatccagccaatttgacacaactatgggaaacATTGTAGTCGatatgggccagcattcctgagGAATGCTTTCGACTCCTTGTGGAGTCCATActcccaacaaattgaggctgttctgagaacaaagcaagggggtgcaactcaatagttgggaaggtgttcctaatatttggtCTACTCAGTGTAGGTAGCCATCAGGCTTGTGTACATTTATTAtacagctggggggggg

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384924 lncRNA downstream 2905 43532282 ~ 43532650 (-) True G2085527
TU2384905 lncRNA downstream 28438 43501034 ~ 43507117 (-) False G2085513
TU2384906 lncRNA downstream 28438 43501034 ~ 43507117 (-) True G2085513
TU2384895 lncRNA downstream 43156 43491907 ~ 43492399 (-) True G2085508
TU2384834 lncRNA downstream 152250 43382330 ~ 43383305 (-) True G2085450
TU2384886 lncRNA upstream 63 43549267 ~ 43554070 (-) True G2085499
TU2384955 lncRNA upstream 36163 43585367 ~ 43585898 (-) True G2085557
TU2384956 lncRNA upstream 37602 43586806 ~ 43587089 (-) True G2085558
TU2384960 lncRNA upstream 46846 43596050 ~ 43596967 (-) True G2085562
TU2384974 lncRNA upstream 71312 43620516 ~ 43636334 (-) False G2085571
XM_036965644.1 mRNA downstream 6208 43295811 ~ 43529347 (-) False LOC110519585
XM_036965645.1 mRNA downstream 6208 43295811 ~ 43529347 (-) False LOC110519585
XM_036965667.1 mRNA downstream 885654 42647144 ~ 42649901 (-) False LOC118944772
XM_021588507.2 mRNA downstream 970975 42561570 ~ 42564580 (-) True LOC110508058
XM_036965653.1 mRNA downstream 995215 42516527 ~ 42540340 (-) False neu4
XM_036965671.1 mRNA upstream 7372 43556576 ~ 43558533 (-) False tmem97
XM_021588535.2 mRNA upstream 7413 43556617 ~ 43558533 (-) True tmem97
XR_005039946.1 mRNA upstream 187866 43737070 ~ 43743473 (-) False LOC110508089
XR_005039948.1 mRNA upstream 187866 43737070 ~ 43762873 (-) False LOC110508089
XM_036964666.1 mRNA upstream 189705 43738909 ~ 43743473 (-) False LOC110508089
TU2383921 other downstream 750520 42784627 ~ 42785035 (-) True G2084740
TU2382643 other downstream 1854863 41676251 ~ 41680692 (-) True LOC118944786
TU2382642 other downstream 1854915 41676251 ~ 41680640 (-) False LOC118944786
TU2382641 other downstream 1855021 41676251 ~ 41680534 (-) False LOC118944786
TU2382371 other downstream 2111515 41423539 ~ 41424040 (-) True G2083443
TU2385185 other upstream 362956 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 1371705 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 1981152 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 2247866 45797070 ~ 45798330 (-) True G2087288
TU2388664 other upstream 3423377 46972581 ~ 46975108 (-) True ndufc2

Expression Profile