RNA id: XR_005039946.1


Basic Information

Item Value
RNA id XR_005039946.1
length 4734
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110508089
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43737070 ~ 43762876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGCCCCCCCTCACACCAATCCAAGGAGCTAACTATTTATTTGACTTCTCTAAGAAGAGAACAGAGATTTTTCCAAAAGTTACGTTTCATCTTGGAAATCTCACAAACCGCcacttttttttcctttttttttttaaagttaattttcttacttttgtctttttttaaattttaatttGGGGGTTTTGATAACTTATTTTGTATCTGAACCAGTGTAGCTCTGACCACCAGGAGAATACACTGTGCCTCACTGTCACTCTCTCCATAGGAGACATGGAATACCCTACTATATTATTTTGTCACCGCAGCCCCCTCGTCGTAGTCAACGGCCAGGGGATAGTGCGTCGTTTAGGACGCAGACTGAGAAAAATGTTTTTACCCAGGTGTCACCACAAAGGTAGGACAATTTAAACTCAAATGTGCCATGATTTATATACGTATACACACCATGACTGATAGGGGGCGCTGTGTTGAAGTCACGTGCCAACAACATGGGTCAACaaccattgtaaaaaaaaaaaatggaggcTAAAGAAATGCATTAACGTCTACATTTTGTTTTTGCCACAGATATTCAACTAAACAccttaattttttttgttttaagttctaatgttactgtccccactacaacaaaatTCCTAAATACATGTGATTTTTGTCCTTGAGAGACattgttaattgaaatactgaagaattccattcattcctatggaggactgcttcttCTGTACTAATATGGAGGACTGCTTCTTCTGTACTAATATGGAGGACCAGTGGCTTCaaaagcctctcattggccaatacacaACATCTATACATCAATGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCGTCTATACATCATTGGCCAATACACAGCGTCTACACATCATTGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCAATGACCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAACATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTACACATCAATGGCCAATACACAGCATctacacatcaatggccaatacacagcatctatacatcattggccaatacacagcatctatacatcaatggccaatacacagcatctacacatcaatacacagcATCTATACATCAATGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGACCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATctacacatcaatacacagcATCTATACATCAATGACCAATACACAGCATCTATACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCGTCTATACATCAATGGCCAATACACAGCGTCTATACATCATTGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCACCTATACATCAATGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTATACATCAATGGCCAATACACAGCATCTACACATCAATGGCCAATACACAGCATCTACACATCATTGGCCAATACACAGCATCTATACATCATTGGTCATGAGCTTGTGACTAATACAGTGAACAATATTGTAGGTTTAACCCATCAATTTGTTGTATTCTAAAACAAACACTTCAGTTCCTTTTTACAGATGAACTCTGGTCTTTGAAAGTATGGGAGGTCATTTGTTTTGAAGGATGGATTtgacttttaaattattttttaaaatttttattttTAGACCATTTGTTGGAGGGGGATAGTAATCAGTGGGTTTAATGTTACTCTAGTCACATgactttttatttttgtttcatttaaTATTGCTTTCCATGCAGCGTAGTTCTGACATAGCTTAATTTAAATGACAATATTATAATTTATATGCagtgtgttgttttttttgttgttttttttaaagcccaATGCTATGATTTCAGAAGGATGAGCCAAATTGATTTGTGACCTAAGGTGGGAGACCagtgtcctctcagcaccatccTGCAGCCTCaaaaggcccccccccccctcttttttaCATTGTAGTGAGTTTACAAGCCTGCCTCGTCAGAACCACATTGGAAGTGTGTAGGGGTTGACATTGGGTTAAATGACAGACTTTTTTTTTTCTCGCTTTTTCTAGATTACATGTCACACCTTTTTGTCTAACTGTGGAGTCAAtgttttttctccctccctctaaaAGCGCTGTAGGTATCtggatgtctgttttttttttttgtgctcgTAGTGTGTCTGCCGGAGGCAGTGTTACTACTGTCTGCCCCATGCTGAAGTCCAAGCCTTAACCCTTAAAGGACACCCAGCTGCAGCAGTGCTCTGACCTTCTCGGGCTCCAACTACTCATCTTTGTACGCCTTCTATGCTTGctactaaccccccccccccccccctccccctccaacccTCCTTTTCTTGTAACAACCTGACAGGCTGTCTGTGGGAAAAGCATAAGACTTCACCTCAAGACCTTAACTATTGGAGTAGACATTACAGTACCTACCTGCCAGGGACCATTTGACCAGCAGGgtctcaccttcgatggccactggcacgctggacaAGTGTGCTCTTCGCGGacgaatcccagtttcaactgtgctCCTGtccaacattgtgaacagagtgccccatgctgacggtggggttatggtaagggCAGGCCAACGGACACAACTGCATTATATGGATACCGTGaccagatcctgaggcccattgtcgtgacaTTTCATCCGTCGCCATCACCACACTTCCAGTTCCCAACGATATCCAGCGATTttagcacagccattgaagaggagtgggacatcaTTCCcgcaggtcacaatcaacagcctgatcaactccatgtgaaggagatgtgttgtgctgcatgaggaaaatggtgggtcacaccagatacggactggttttctgatccacgccccctaCCTTTTTAAAGTTATCAGtattcacagtcatgtgaaatccatagattagggcttaatgaatttttcaattgactgatttctttatatcaACTAACTCCAATAAAATCTTAGCAATTGTTggatgttttatatttttgttcagtgtagatgagTAATTGACATACTAGTCATTTAAAGGGATCAGATTCGATACACTAACTTCTTAGTAAAGGACAACATTATTCACTACACTGACATCTCTCCAGTCCACAACTCTTTATTTACTCGTTGCGTTacagtggggtgggggggggaagaAACATGTATTCTAGTGGGTGGGCCTCTGACCTTCTAAGCCCACCCATGACTGCGCCCctgcacagtcatgtgaaatccatagatttattttttatgactttttttcagttgactgattttcctttttatatgaactgtaactgagtAAAAATCGttaattgtttcatgttgcgtttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385085 lncRNA downstream 2439 43734382 ~ 43734631 (-) True G2085642
TU2385082 lncRNA downstream 5338 43731403 ~ 43731732 (-) True G2085639
TU2385060 lncRNA downstream 36754 43696584 ~ 43700316 (-) False G2085620
TU2385061 lncRNA downstream 36754 43696584 ~ 43700316 (-) True G2085620
TU2384987 lncRNA downstream 94880 43641031 ~ 43642190 (-) True G2085580
TU2385089 lncRNA upstream 10892 43754365 ~ 43754941 (-) False G2085645
TU2385091 lncRNA upstream 10892 43754365 ~ 43754941 (-) True G2085645
TU2385097 lncRNA upstream 27359 43770832 ~ 43771384 (-) True G2085649
TU2385108 lncRNA upstream 46270 43789743 ~ 43792295 (-) True G2085659
TU2385121 lncRNA upstream 74456 43817929 ~ 43818456 (-) False G2085671
XM_036965671.1 mRNA downstream 178537 43556576 ~ 43558533 (-) False tmem97
XM_021588535.2 mRNA downstream 178537 43556617 ~ 43558533 (-) True tmem97
LOC110508094 mRNA downstream 187866 43535555 ~ 43549204 (-) True LOC110508094
XM_036965644.1 mRNA downstream 207723 43295811 ~ 43529347 (-) False LOC110519585
XM_036965645.1 mRNA downstream 207723 43295811 ~ 43529347 (-) False LOC110519585
XM_036964682.1 mRNA upstream 3653 43747126 ~ 43762876 (-) False LOC110508089
XM_021588532.2 mRNA upstream 25767 43769240 ~ 43783275 (-) True LOC110508088
XM_036964826.1 mRNA upstream 519492 44262965 ~ 44290055 (-) False LOC110507241
XM_036964827.1 mRNA upstream 519492 44262965 ~ 44310016 (-) False LOC110507241
XM_036964828.1 mRNA upstream 519493 44262966 ~ 44310014 (-) False LOC110507241
TU2383921 other downstream 952035 42784627 ~ 42785035 (-) True G2084740
TU2382643 other downstream 2056378 41676251 ~ 41680692 (-) True LOC118944786
TU2382642 other downstream 2056430 41676251 ~ 41680640 (-) False LOC118944786
TU2382641 other downstream 2056536 41676251 ~ 41680534 (-) False LOC118944786
TU2382371 other downstream 2313030 41423539 ~ 41424040 (-) True G2083443
TU2385185 other upstream 168687 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 1177436 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 1786883 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 2053597 45797070 ~ 45798330 (-) True G2087288
TU2388664 other upstream 3229108 46972581 ~ 46975108 (-) True ndufc2

Expression Profile