RNA id: XM_021595427.2


Basic Information

Item Value
RNA id XM_021595427.2
length 2335
RNA type mRNA
GC content 0.51
exon number 1
gene id lpar6a
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46409330 ~ 46497886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGCCTGTGTTCCTCTCACTGCATGTGTGAGCTGTACAATACCCTTGAGGCTGTCACAGACAaaaacagaggggagagagaaaaatagagagagggagggagggagacagaggagagggcaggaaaTAGACCTTGAAGAGAAAcagatactctctctctctctcactcactcacacacacacccacacggagGACTGAGGGAGGACCTTACATTCTCTCGGTCTCTACTCTACGCTCAGGACAAAGCAACACGCCGGTTTAACTTTAGAGCCTCTCCTGTGACACCAGCACAGAGACACCGTCAACTGCTTCACGACAGGAGAACGAGGGTGGAAAGCCTGGATCATTTTCAAACAAAGAGGACAAAGGAGGATCGTGGACTGTAGTGATAAACATCTCAACAAGAAAAGAGGAGAAGTGTTACTATAAAGAACTCTCCACAAGTGaattattatattttattaaacCCTTCTTCTCTGCGAGGACTTGGACCGGAGAACGGTTACAGGAGTTATTCTGAgcgtagtaaaaaataaaaaacgttttttttttttttttgtggctgCCTGAGTGGCTGGCTGCTGTCTGAGTAAGTACAGCTCTCTGTCTCAGCCAGTTAGTCCTGCAGCCTCGGGGCCAGAGTCCTGCCGGCAGGGGACAGGGGGAGGGTAGGTAGGAGGAAGCTGCAGCGTGGATCCCCAGTCCTATGGGGAAGGAAGGGGTCCTCTTCCAACACCACCGTCACGTCACCAACATGTCAACAAAATGGGGTAGGAAACATAGTGATCATGGAGATTTTGGAATGAAAACTTTGGTGTTTTAACGGTTGTTCAAGCGTTTACACAGTTTAGAGGCGTTTTGTGTTGTGCCTCGCTGGACATTCATGGTGGATTGGGGACCAAGAGTTGAGTGAAATACTTTCATTGTATAGTTGTTACACAACccaccgaccccccccccccccctccaccgacACCCCCCTCAGTGTTCCCTTGCTTCCTCAACAACATGAACAATACCAACCTGATCCCACTGGCCATGTCGACAGACAACTTCACCCTGATGAAATACGGTCTCGGTGGGATTATCAGATCAAGCATCACTCCTTTGCTGCACCAACTCAACTCGTCCTCCGTCTCCTCAGACAGTTCCAACTGCACCAAGAACGATGGCTTTAAGTATCCTCTCTACAGCACCGTCTTCAGCCTGGTGTTCATTGTGGGGTTGATCACTAACATGGCGGCCATGTATATATTCACCTGTACTCTCAAGTTGAGGAACGAGACGACGACCTACATGATCAACCTAGTGGTGTCAGACCTTCTCTTCGTCTTCACACTGCCTCTCAGGGTCTTCTACTTCCTTAACCAGGACTGGCCGTTCGGCGGGATACTCTGCAAGCTCTCCGTCTCATTATTTTATACCAACATGTACGGGAGTATTCTATTCCTCACTTGCATTAGTGTGGATCGGTTCCTGGCCATCGTTCACCCGCTCAGGTCACGGGCGTTGAGAACAAAGAGGAACGCTAAGATGGTGTGCGTGGCGGTCTGGGTTCTGGTGTTGGCAGGGAGTCTACCGACGGGGTTTAAACTGGAGACCACATCGCCACACCACAACCACTCCACCGCACGGTTCTGTTTCGAGAACTTCTCATCCAAGCAGTGGAAGTCCCACCTCTCCAAGGTGGTAATCTTCATCGAGACGGTGGGGTTCCTGATCCCCTTGCTCCTCAACGTGGTATGTTCCGTCATGGTTCTCCAGACCCTGAGGAGACCCCAGACCATCAGCCGCGGGGGGAAACTCAACAAAACCAAGATCCTTCGAATGATCGTGGTTCATCTCTTCATCTTCTGCTTCTGTTTCATCCCTTATAACGTCAACCTAGTCTTCTATGCCCTGGTTCGAACTGGGACGCTGAAGGGCTGCGCTTCAGAGACCGTAGTCCGAACTATCTATCCTATCGCTCTCTGTATTGCTGTGTCCAACTGCTGTTTTGACCCGATCATCTACTACTTTACCTCGGAGACCATCCAGAACTCTATCAAGaggaagtccacgatcagccaGGCGTACGACATTAAGTTCTCTGAGGCACTGCAGAGTGAGACCAGCGCCAACTTCCACTGCAGCCTGAGGACACTGAAAGACAAGGTGTTTAGCAACACCGAGTCTTCTGTGTGACACTGGGGGGTGTGGagggactgactggctggctggttgactggttaactgactggctggctggttgactggttagctgactggctggttgactggttagctgactggctggctgtatggcaggcttactgactgactggatggctggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388363 lncRNA downstream 31510 46461448 ~ 46464042 (-) True G2088106
TU2388361 lncRNA downstream 34168 46457697 ~ 46461384 (-) False G2088105
TU2388360 lncRNA downstream 34168 46458571 ~ 46461384 (-) True G2088105
TU2388304 lncRNA downstream 50026 46383370 ~ 46445526 (-) False G2088069
TU2388303 lncRNA downstream 50026 46445114 ~ 46445526 (-) True G2088069
TU2388387 lncRNA upstream 12225 46510111 ~ 46525606 (-) False G2088121
TU2388388 lncRNA upstream 13653 46511539 ~ 46515054 (-) True G2088122
TU2388386 lncRNA upstream 18290 46516176 ~ 46525606 (-) True G2088121
TU2388399 lncRNA upstream 40946 46538832 ~ 46539374 (-) True G2088129
TU2388401 lncRNA upstream 50391 46548277 ~ 46548505 (-) True G2088131
XM_021594296.2 mRNA downstream 130424 46362662 ~ 46365128 (-) True LOC110515379
XM_036964969.1 mRNA downstream 298323 46012193 ~ 46197229 (-) False cog6
XM_036964970.1 mRNA downstream 301671 46012193 ~ 46193881 (-) False cog6
XM_036965519.1 mRNA downstream 793968 45687954 ~ 45701584 (-) False slc25a15a
XM_036965520.1 mRNA downstream 793968 45687954 ~ 45701584 (-) True slc25a15a
XM_036965176.1 mRNA upstream 38315 46536201 ~ 46571285 (-) False rcbtb2
XM_036965177.1 mRNA upstream 38315 46536201 ~ 46571673 (-) False rcbtb2
XM_036965178.1 mRNA upstream 38315 46536201 ~ 46571673 (-) False rcbtb2
XM_036965179.1 mRNA upstream 38446 46536332 ~ 46571289 (-) True rcbtb2
XM_036965047.1 mRNA upstream 270762 46768648 ~ 46770702 (-) True LOC118944689
TU2387219 other downstream 697222 45797070 ~ 45798330 (-) True G2087288
TU2386975 other downstream 964772 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 1574240 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 2582872 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 3710517 42784627 ~ 42785035 (-) True G2084740
TU2388664 other upstream 474695 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 505979 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 754789 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1046417 47544303 ~ 47550500 (-) True G2088739
TU2389987 other upstream 1295710 47793596 ~ 47794379 (-) False G2089393

Expression Profile