Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005194 |
| length | 2170 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_002801 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 26268790 ~ 26430168 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:1903673 | mitotic cleavage furrow formation | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0007043 | cell-cell junction assembly | biological_process |
| GO:0060471 | cortical granule exocytosis | biological_process |
| GO:0007343 | egg activation | biological_process |
| GO:0031109 | microtubule polymerization or depolymerization | biological_process |
| GO:0034332 | adherens junction organization | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0098742 | cell-cell adhesion via plasma-membrane adhesion molecules | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0016339 | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005912 | adherens junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016342 | catenin complex | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0045296 | cadherin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-41 | Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including atrioventricular canal development; cortical granule exocytosis; and mitotic cleavage furrow formation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in several structures, including blastomere; heart; mesoderm; musculature system; and retina. Human ortholog(s) of this gene implicated in Van Maldergem syndrome 1 and mitral valve prolapse. Orthologous to human DCHS1 (dachsous cadherin-related 1). |
| ensembl_id | ENSDART00000108798 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006054 | lncRNA | downstream | 126935 | 26132469 ~ 26142597 (-) | False | XLOC_002799 |
| TCONS_00005184 | lncRNA | downstream | 126935 | 26141070 ~ 26142597 (-) | True | XLOC_002799 |
| TCONS_00005171 | lncRNA | downstream | 570173 | 25697159 ~ 25699359 (-) | False | XLOC_002794 |
| TCONS_00005764 | lncRNA | downstream | 577862 | 25690872 ~ 25691670 (-) | True | XLOC_002793 |
| TCONS_00005763 | lncRNA | downstream | 582314 | 25686901 ~ 25687218 (-) | True | XLOC_002792 |
| TCONS_00006055 | lncRNA | upstream | 166958 | 26441052 ~ 26447113 (-) | False | XLOC_002802 |
| TCONS_00006056 | lncRNA | upstream | 166958 | 26441052 ~ 26447171 (-) | True | XLOC_002802 |
| TCONS_00006057 | lncRNA | upstream | 562742 | 26836836 ~ 26872413 (-) | True | XLOC_002807 |
| TCONS_00005206 | lncRNA | upstream | 618473 | 26892567 ~ 26895076 (-) | True | XLOC_002808 |
| TCONS_00006058 | lncRNA | upstream | 627178 | 26901272 ~ 26902305 (-) | True | XLOC_002809 |
| TCONS_00005188 | mRNA | downstream | 43304 | 26202235 ~ 26226228 (-) | False | XLOC_002800 |
| TCONS_00005189 | mRNA | downstream | 43854 | 26205779 ~ 26225678 (-) | False | XLOC_002800 |
| TCONS_00005191 | mRNA | downstream | 43984 | 26212278 ~ 26225548 (-) | True | XLOC_002800 |
| TCONS_00005190 | mRNA | downstream | 51178 | 26206083 ~ 26218354 (-) | False | XLOC_002800 |
| TCONS_00005185 | mRNA | downstream | 66766 | 26190807 ~ 26202766 (-) | False | XLOC_002800 |
| TCONS_00005195 | mRNA | upstream | 228240 | 26502334 ~ 26512742 (-) | False | XLOC_002803 |
| TCONS_00005197 | mRNA | upstream | 230698 | 26504792 ~ 26512993 (-) | False | XLOC_002803 |
| TCONS_00005196 | mRNA | upstream | 230698 | 26504792 ~ 26512993 (-) | True | XLOC_002803 |
| TCONS_00005198 | mRNA | upstream | 442268 | 26716362 ~ 26738209 (-) | False | XLOC_002804 |
| TCONS_00005200 | mRNA | upstream | 442268 | 26716362 ~ 26744166 (-) | False | XLOC_002804 |
| TCONS_00005187 | other | downstream | 67009 | 26196284 ~ 26202523 (-) | False | XLOC_002800 |
| TCONS_00005183 | other | downstream | 128451 | 26132469 ~ 26141081 (-) | False | XLOC_002799 |
| TCONS_00005164 | other | downstream | 770058 | 25494173 ~ 25499474 (-) | True | XLOC_002790 |
| TCONS_00005133 | other | downstream | 1813800 | 24455616 ~ 24455732 (-) | True | XLOC_002771 |
| TCONS_00005130 | other | downstream | 1886151 | 24383266 ~ 24383381 (-) | True | XLOC_002768 |
| TCONS_00005203 | other | upstream | 469502 | 26743596 ~ 26744131 (-) | True | XLOC_002804 |
| TCONS_00005214 | other | upstream | 732177 | 27006271 ~ 27009124 (-) | False | XLOC_002814 |
| TCONS_00005218 | other | upstream | 895862 | 27169956 ~ 27170072 (-) | True | XLOC_002817 |
| TCONS_00005228 | other | upstream | 1140152 | 27414246 ~ 27414362 (-) | True | XLOC_002819 |
| TCONS_00005237 | other | upstream | 1924800 | 28198894 ~ 28199041 (-) | False | XLOC_002823 |
