RNA id: TU2333959


Basic Information

Item Value
RNA id TU2333959
length 1867
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2040157
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1554605 ~ 1556521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacaggaatagGAGTGCCAAACACGCCCcaattcacatcgacggggctgtagtggagcgggtcgagagcttcaagttcctcggtatcccagtacattactggggcctatcttcctgccatccaggacctctatactaggaggtgtcagaggaaggccccaaaaatggtcatagactcaagccacccaagtcatagactgttctctctgctacagcacggcaagcggtaccagatcaccaagtctatgtccaaaaggctccttaacagcttatatccctaagccataagactgctgaacagttaatcaaatggctacctagactatttgcattgaccccccctttTTTTACgttgctgcttctcactgtttattatctatgtatagtcactttacccctacctacatgtacatattaccttgactaacctgtacccctgcacattgactcggtaccagtaacccctgtatatagcctcatatTATTTTCTTAACGCTCAGTTTCTTAAAACCtcattgttggttaaggcttgttagtaagcatttcacagtaaggtctactacacctgttgtatttggggcATGTGACATTTACAATTTGATCATCTCTGAACCACTCACATGAAATGAGCTTCGGTGCCCCAAGTTAACAGTGACTTGGGGATTTTGTCTAGGATCTCAAAAACTGTCCCAGACACGTGTGAGCGGTTCAGAGACGATCAAATTGTAAATGTGCCTACATGCACCTTATTCGCACATAAAGAAGCCAAAACCTATGTAATGACACTAcatgacaaaagtatgtggacacgtgctcgtctaacatctcattccaaaatcatgggcattaatatggagttggtcccccctttgctgctgtaacaacctccactcttctgggaaggctttgcaCGAGATGTTGTAACATCGCTGCtatcacgttctgaccataggtcttgtgtgttttccttgttttagtgttggtcaggacgtgagctgggtgggcattctatgttgtgtgtctagtttgtctgtttctgtgtttggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgttttgtgggtgattatttcctgtctttgttgcaccagatagggctgttttggtttttcacgtttcttgttttgtatattgttcagCTTTCATTAAGGATGTATAAAGGTAACCactctgcattttggtcctcctctccttcccaggaagaatcccgttacagctgcagggacttgtttccattcagcgaGAAGAGCATTAGTAAGGTTGTGCGATTACAAACGTaacaattggcactatgcattcggcaggtagcgttctcctggcatctggtAAACCCAGactctgccagatggtgaaacgtgattcatcacgcCAAAGAATTtgtttccattgctccagagtccaatggcggcgagctttacaccactccagccgacgcttggcattgcgcatagtgatcttaggcttgcgaTGCACATCATTAATGTGCATCAGACAAGTGACTTGAATGTTATACATTGTTTGTCAATTATTTTCCAGCAGTTTCTCTTTAGGGTTGTTAAATatgttttattacattttagCTTGTTTATAGTGTTACCATCTACACAGATCTCAGATTATtcacacaatttgatttgatgtggtcATTGTAGGCCGAACGCGGGACTTGCTCTCCCTCTCATACAGTATGGTCACATTTCAGGCCAACTACATCGCATCGACCCGTGGTCGATTGATTTGTACAGTCAGGCATCAGATTGCatatcatacagtgccttgcgaaggtattcggcccccttgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333964 lncRNA upstream 15433 1537973 ~ 1539172 (+) True G2040158
TU2333873 lncRNA upstream 115853 1435224 ~ 1438752 (+) True G2040075
TU2333851 lncRNA upstream 144994 1408153 ~ 1409611 (+) False G2040054
TU2333850 lncRNA upstream 144994 1408200 ~ 1409611 (+) True G2040054
TU2333744 lncRNA upstream 218990 1335188 ~ 1335615 (+) True G2039948
TU2333976 lncRNA downstream 5528 1561999 ~ 1562295 (+) True G2040166
TU2333977 lncRNA downstream 6042 1562513 ~ 1562805 (+) True G2040167
TU2333978 lncRNA downstream 6720 1563191 ~ 1563573 (+) True G2040168
TU2333979 lncRNA downstream 7890 1564361 ~ 1564772 (+) True G2040169
TU2333983 lncRNA downstream 13604 1570075 ~ 1587985 (+) True G2040172
XM_021587204.2 mRNA upstream 252113 1290585 ~ 1302492 (+) True gmnc
XM_021587201.2 mRNA upstream 430451 1122000 ~ 1124154 (+) True LOC110507306
XM_021587200.2 mRNA upstream 462906 1075178 ~ 1091699 (+) True LOC110507305
XR_002471104.2 mRNA upstream 512099 1021095 ~ 1042506 (+) True LOC110507304
XM_021587199.2 mRNA upstream 693211 848919 ~ 861394 (+) True rhbdd1
XM_021587225.2 mRNA downstream 24209 1580680 ~ 1601430 (+) True LOC110507313
XM_036964626.1 mRNA downstream 45645 1602116 ~ 1608092 (+) True LOC110507041
XM_021587226.2 mRNA downstream 68732 1625203 ~ 1677253 (+) False atg16l1
XM_021587227.2 mRNA downstream 68732 1625203 ~ 1677253 (+) False atg16l1
XM_021587228.2 mRNA downstream 68732 1625203 ~ 1677253 (+) True atg16l1
TU2333878 other upstream 56040 1442677 ~ 1498565 (+) True G2040080
TU2332885 other upstream 736137 817376 ~ 818468 (+) False LOC110507300
TU2333993 other downstream 96369 1652840 ~ 1655336 (+) True G2040180
TU2334651 other downstream 977423 2533894 ~ 2536687 (+) False G2040773
TU2334652 other downstream 977423 2533894 ~ 2542349 (+) True G2040773
TU2334614 other downstream 1113918 2670389 ~ 2685738 (+) False rpl35a
TU2334615 other downstream 1113918 2670389 ~ 2685738 (+) True rpl35a

Expression Profile