RNA id: TU2334145


Basic Information

Item Value
RNA id TU2334145
length 1430
lncRNA type read_through
GC content 0.47
exon number 2
gene id G2040319
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1836423 ~ 1850761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagtaaaaaaaaaaaagaaaaaagagaagaaaaaaagggAACATTTAAATCAGAGGGGCATCCGGTTGCCCTGGACGCTGATCTTCACCGCGTGGCCCGTCTTCGTCATACGCTTTATGTCAGCGAAGCGACGCAACTGTTTGTCCACCCGTGACATGCCCTTCTTAACCGGGGcctgggagacagagggaggagaggattacAAAAGGAGAGACAGGAAAGTGGAACTACTCTGTCGCAAACATTCACCAAAACACAGTGCGTCTTTGCCACAATATTGGAGAGTGGTAATACGGTAGTACCACTACAAGCCTAGCGAGCAAGGTtattgacacacaaacacactcgcaTCAAATTTGGAATGGTCTGTCGATCTGATATTTCTCATTAAGTTTCGTAACCATATTATTTAAAACTTTGAACACTAAGTTGATTAGGAACACATTCCCACCATGCTGGGCACAAACTCAAGCAACAATGGTATAGCCAAATGTCTTAAAACCAGGGAAGTTCAAATGTTACAGCTCAAACAgtgtagtactgtgtgttatGTTTTAAACAGGGGACTCATTCATTCATTAGGCGGCTGGGCAACAGTGTGCAGAACCGTTTGACTTGGTAAGTGGTGGGATGGTTGCTCTCCAGTCCACACTGCACACAATGGCCCTGGGTAGAAGCTTACCCTCTCTCATTCTCAACCTTCACCATTAGTGGGGGTAACaattaactgacctaagatcagtTTCTATGGGCAACTTTGTCCAACCAAGGACCAGCAAAAGACATGCAGGTGGCACTTACTGCCCCGTGTGGTGACAGTAGGAATTACAGGGGCATGCCATTGCCATCCACATTGATCTTCACCGCTGTGATGCGCCGCTGTGACCTCTGCTGGGCGATGCGACGCTTGTGCTTTTCCAATCGGCTTATCCCTTTCTTAATGCTTGTCTACAGTCGGGAACCAATCACATTCAGCTCCTTACCGATGCCCACGTCATGTATTGACAAAACATCTAACAGACCCAGTTCAGTCACAACTAAGGTAACTTAGCTAAAAATGACCTAGAAACGGTTATGTCCGGAATCAAGGATTTCAGGTTGGAGAAGAAAATTGGTCTGATTTATACAGTTAAAAGAAATGGGAAAACTAtcctttctcctcccttctcccaggCAGACAGCTGGACGGACAAACACTCACTGCTCTGGACTCGCTCTCCACGTTCCATTTGGGCCGCACAACGTAGTCCTTGTTGGATGGCATGGGCACCCTGGCCCGGGCACAGAACCCAGGGTCGCCTGGGCGCAGAGCTCTGTCGGGCAACAAACACAAGAGGGGTGTCAGCAAAGAGCAACACAGACAACAGactaagacacacacaccacatgtgaACACCCAGGTCACTACTCACTTCTCTTCTCCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2334057 lncRNA upstream 90803 1703518 ~ 1745620 (+) False G2040241
TU2334058 lncRNA upstream 90803 1719200 ~ 1745620 (+) True G2040241
TU2334051 lncRNA upstream 106155 1696649 ~ 1730268 (+) True G2040235
TU2334036 lncRNA upstream 147802 1664941 ~ 1688621 (+) True G2040221
TU2333983 lncRNA upstream 248438 1570075 ~ 1587985 (+) True G2040172
TU2334231 lncRNA downstream 114843 1965604 ~ 1968310 (+) False LOC110507322
TU2334232 lncRNA downstream 115744 1966505 ~ 1968852 (+) False LOC110507322
TU2334246 lncRNA downstream 115744 1966505 ~ 1968310 (+) True LOC110507322
TU2334416 lncRNA downstream 356856 2207617 ~ 2212183 (+) True G2040560
TU2334469 lncRNA downstream 432096 2282857 ~ 2286192 (+) True G2040605
LOC110507042 mRNA upstream 21978 1763705 ~ 1814445 (+) True LOC110507042
XM_036965623.1 mRNA upstream 84696 1722598 ~ 1751727 (+) False LOC110507315
XM_036965624.1 mRNA upstream 84696 1722598 ~ 1751727 (+) False LOC110507315
XM_036965625.1 mRNA upstream 84696 1722598 ~ 1751727 (+) False LOC110507315
XM_036965626.1 mRNA upstream 84696 1722598 ~ 1751727 (+) True LOC110507315
XR_005040018.1 mRNA downstream 41693 1892454 ~ 1905690 (+) True LOC118944727
XR_002471109.2 mRNA downstream 115768 1966529 ~ 1972042 (+) False LOC110507322
XM_021587247.2 mRNA downstream 644898 2495659 ~ 2498344 (+) False LOC110507327
XM_036965289.1 mRNA downstream 645379 2496140 ~ 2498344 (+) True LOC110507327
XM_036965677.1 mRNA downstream 717005 2567766 ~ 2640205 (+) False LOC110507330
TU2333993 other upstream 181087 1652840 ~ 1655336 (+) True G2040180
TU2333878 other upstream 337858 1442677 ~ 1498565 (+) True G2040080
TU2332885 other upstream 1017955 817376 ~ 818468 (+) False LOC110507300
TU2334651 other downstream 683133 2533894 ~ 2536687 (+) False G2040773
TU2334652 other downstream 683133 2533894 ~ 2542349 (+) True G2040773
TU2334614 other downstream 819628 2670389 ~ 2685738 (+) False rpl35a
TU2334615 other downstream 819628 2670389 ~ 2685738 (+) True rpl35a
TU2334749 other downstream 949020 2799781 ~ 2802001 (+) True G2040863

Expression Profile