RNA id: TU2337325



Basic Information


Item Value
RNA id TU2337325
length 669
RNA type TUCP
GC content 0.46
exon number 1
gene id G2043193
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4405458 ~ 4406126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atataggttttcataccctttgctatgagacacgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacctatctatataaagtcccacagttgacagtgcatgtcagagcaaaaaccaagccatgaggtcgaaggaattgtctgtagagctccaagacagaattatgttgaggcacagatgtggggaatggtaccaaaacatttctgcagtattgaaagtcccgaagaacacagtggcctgcatcattcttaaatggaagaaccaccaagactcttccttgagatggccacccggccaaactgagcaatcgggggagaagggccttagtcaaggccaagaatccgatggtcactctgacagagctcctgagttcctctgtgaagatgggagaaccttccagaaggtcaaccatctctgcagcactccaccaatcaggcctttatggtaaagtggccagatggaagccactcctcagtaaaatgcacatgacagcccacttggagtttgccaaaaggcacctaaaggactctcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactcttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2337322 lncRNA upstream 3639 4401582 ~ 4401819 (+) True G2043190
TU2337315 lncRNA upstream 17045 4383303 ~ 4388413 (+) False ttc12
TU2337301 lncRNA upstream 40523 4364682 ~ 4364935 (+) True G2043169
TU2337192 lncRNA upstream 267208 4138050 ~ 4138250 (+) True G2043060
TU2337148 lncRNA upstream 267726 4070943 ~ 4137732 (+) True G2043018
TU2337326 lncRNA downstream 74 4406200 ~ 4406438 (+) True G2043194
TU2337328 lncRNA downstream 3864 4409990 ~ 4410224 (+) True G2043196
TU2337330 lncRNA downstream 8347 4414473 ~ 4414749 (+) True G2043198
TU2337331 lncRNA downstream 10373 4416499 ~ 4416828 (+) True G2043199
TU2337332 lncRNA downstream 11868 4417994 ~ 4418231 (+) True G2043200
XM_036965312.1 mRNA upstream 44338 4312281 ~ 4361120 (+) False si:dkey-103g5.4
XM_036965313.1 mRNA upstream 44338 4312281 ~ 4361120 (+) True si:dkey-103g5.4
XM_036964627.1 mRNA upstream 95200 4307237 ~ 4310258 (+) True LOC118944636
XM_036964957.1 mRNA upstream 114132 4267404 ~ 4291326 (+) True LOC110507362
XM_021587309.2 mRNA upstream 229031 4158264 ~ 4176427 (+) True ppp2r1bb
XM_021587317.2 mRNA downstream 31261 4437387 ~ 4447253 (+) True ankk1
XM_021587147.2 mRNA downstream 261411 4667537 ~ 4670273 (+) True LOC110507258
XR_002471094.2 mRNA downstream 264313 4670439 ~ 4674088 (+) True LOC110507259
XM_021587321.2 mRNA downstream 279742 4685868 ~ 4691150 (+) False LOC110507374
XM_021587323.2 mRNA downstream 289596 4695722 ~ 4703620 (+) False hepacama
TU2334775 other upstream 1566531 2834096 ~ 2838927 (+) True G2040882
TU2334764 other upstream 1590117 2814276 ~ 2815341 (+) False LOC110507334
TU2334765 other upstream 1590117 2814276 ~ 2815341 (+) True LOC110507334
TU2334749 other upstream 1603457 2799781 ~ 2802001 (+) True G2040863
TU2334614 other upstream 1719720 2670389 ~ 2685738 (+) False rpl35a
TU2337846 other downstream 279759 4685885 ~ 4691127 (+) False LOC110507374
TU2337845 other downstream 279789 4685915 ~ 4692872 (+) False LOC110507374
TU2337847 other downstream 279789 4685915 ~ 4691127 (+) True LOC110507374
TU2339431 other downstream 1485721 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 1486897 5893023 ~ 5896113 (+) True LOC110507397

Expression Profile