RNA id: TU2338863


Basic Information

Item Value
RNA id TU2338863
length 229
lncRNA type antisense_over
GC content 0.58
exon number 1
gene id G2044621
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5327805 ~ 5328033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTGGCATGCCGATGCCGTAGCCCTTGGTGTCCAGCAGACCTCCTATCTGGGTGAGGTTACAGTTGCGCTGCCGGTAGTACTCGTTCATGGTGCTCTCTAGCAGGTAGGCATAGTTGGAGTTGACCACGCGGGCGATGCCCTCCTCCGTGCTCTTCACAAACACACTGGGCTGCTTGGAGTGCATGAAGTTCCACATGCGCTGGTACGTCTGGTAGCGCGAGTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2338859 lncRNA downstream 3667 5323863 ~ 5324138 (-) True G2044617
TU2338468 lncRNA downstream 546671 4779119 ~ 4781134 (-) True G2044237
TU2338423 lncRNA downstream 554753 4711558 ~ 4773052 (-) False G2044198
TU2338424 lncRNA downstream 554753 4770314 ~ 4773052 (-) True G2044198
TU2338459 lncRNA downstream 573265 4753113 ~ 4754540 (-) True G2044228
TU2338864 lncRNA upstream 1016 5329049 ~ 5329533 (-) True G2044622
TU2338865 lncRNA upstream 3350 5331383 ~ 5332173 (-) True G2044623
TU2338881 lncRNA upstream 17835 5345868 ~ 5346143 (-) True G2044635
TU2339075 lncRNA upstream 114998 5443031 ~ 5448167 (-) True LOC110507384
TU2339149 lncRNA upstream 150643 5478676 ~ 5481199 (-) True G2044886
XM_021587319.2 mRNA downstream 701062 4573030 ~ 4626743 (-) True LOC110507371
XM_036965010.1 mRNA downstream 755434 4553910 ~ 4572371 (-) True scn3b
XM_036965004.1 mRNA downstream 755435 4550225 ~ 4572370 (-) False scn3b
XM_036965170.1 mRNA upstream 18295 5346328 ~ 5350245 (-) False ccdc153
XM_036965169.1 mRNA upstream 18296 5346329 ~ 5350231 (-) True ccdc153
XM_021587343.2 mRNA upstream 114982 5443015 ~ 5490538 (-) False LOC110507384
XM_021587342.2 mRNA upstream 114982 5443015 ~ 5490555 (-) False LOC110507384
XM_021587344.2 mRNA upstream 114982 5443015 ~ 5490555 (-) False LOC110507384
TU2337664 other downstream 913382 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 948376 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 979396 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 1786052 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 1924808 3400579 ~ 3402997 (-) True G2042608
TU2339133 other upstream 212994 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 540542 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 904582 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 1161689 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 1174382 6502415 ~ 6505948 (-) False LOC110507418

Expression Profile