RNA id: TU2339506


Basic Information

Item Value
RNA id TU2339506
length 291
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2045193
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5808386 ~ 5808676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcatagttgaagtgtacctatgatgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggttgactaaatgcttttttgccccactgtacgtacatatatacatacatacacacacatatgctaCCATCACAAGACAAAGGCATCCTTATTGCTCCTAGAAtatttaagcaaacagctggaggcagggctttctcctatagagctccatttttatgtaATAGCcagcctatccatgtgagagacacagactcggtctcgacctttaagtcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339504 lncRNA downstream 1730 5806176 ~ 5806656 (-) True G2045191
TU2339501 lncRNA downstream 5290 5802878 ~ 5803096 (-) True G2045188
TU2339500 lncRNA downstream 5572 5802418 ~ 5802814 (-) True G2045187
TU2339364 lncRNA downstream 54344 5753656 ~ 5754042 (-) True G2045090
TU2339362 lncRNA downstream 55606 5752548 ~ 5752780 (-) True G2045088
TU2339510 lncRNA upstream 6295 5814971 ~ 5815223 (-) True G2045197
TU2339515 lncRNA upstream 14012 5822688 ~ 5823546 (-) True G2045202
TU2339516 lncRNA upstream 16333 5825009 ~ 5825238 (-) True G2045203
TU2339517 lncRNA upstream 16613 5825289 ~ 5825503 (-) True G2045204
TU2339546 lncRNA upstream 60232 5868908 ~ 5870094 (-) True G2045223
XM_021587366.2 mRNA downstream 9894 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587367.2 mRNA downstream 9894 5795135 ~ 5798492 (-) True c27h19orf54
LOC118944669 mRNA downstream 41554 5759611 ~ 5766832 (-) True LOC118944669
XM_021587362.2 mRNA downstream 74021 5720390 ~ 5734365 (-) True LOC110507390
XM_021587361.2 mRNA downstream 98297 5679726 ~ 5710089 (-) True LOC110507389
XM_036965171.1 mRNA upstream 259748 6068424 ~ 6105009 (-) True LOC110507406
LOC110507409 mRNA upstream 414251 6222927 ~ 6224524 (-) True LOC110507409
XM_021587394.2 mRNA upstream 419437 6228113 ~ 6235871 (-) False LOC110507410
XR_002471123.2 mRNA upstream 522601 6331277 ~ 6334270 (-) False LOC110507423
XR_002471124.2 mRNA upstream 522601 6331277 ~ 6334270 (-) False LOC110507423
TU2339133 other downstream 266753 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1393963 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1428957 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1459977 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 2266633 3539184 ~ 3541753 (-) True LOC110507356
TU2339541 other upstream 59899 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 423939 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 681046 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 693739 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 693739 6502415 ~ 6507581 (-) True LOC110507418

Expression Profile