RNA id: TU2339413


Basic Information

Item Value
RNA id TU2339413
length 402
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2045130
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5820288 ~ 5820689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCACAGCATGAACGCCAAAATACTTTGCTCAGCCACCGGTATGTCCACTCTCAATGGCAAGGGGTCCCTTCAAACTCAAACTCGATCTAACAGACAAACTTTAGGATATTTTTTTCTCGGCTTTGTTTTGCAGACAGGCCTCATTCTCCACTACCATAATACGTGGTCCCCTAATTGCGCGGAGGTAGTCCCATAGAAACTCTTTCAGTTCGCCGACCAGTTACTGACAGTGCAGGCTGTGACTGACAGCCTACTTAATTGGCACAGCAGCGCTTTGATCTATACCGGATTAACCGAGGCCGGAAACTAGGGTAAAGCACATTCAGTGGCGATTTTGGAATGTAGTAAATCTTGGCGGGGcaaactcaacaacaacaaaaatgtatgcatgccagcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339401 lncRNA upstream 5518 5814296 ~ 5814770 (+) True G2045124
TU2339383 lncRNA upstream 23791 5795997 ~ 5796497 (+) True G2045106
TU2339391 lncRNA upstream 43721 5776329 ~ 5776567 (+) True G2045114
TU2339388 lncRNA upstream 46843 5772686 ~ 5773445 (+) True G2045111
TU2339218 lncRNA upstream 182571 5637518 ~ 5637717 (+) True G2044952
TU2339415 lncRNA downstream 2993 5823682 ~ 5823882 (+) True G2045132
TU2339416 lncRNA downstream 4847 5825536 ~ 5825771 (+) True G2045133
TU2339443 lncRNA downstream 27163 5847852 ~ 5848596 (+) True G2045140
TU2339610 lncRNA downstream 115650 5936339 ~ 5936640 (+) True G2045268
TU2339614 lncRNA downstream 130362 5951051 ~ 5951352 (+) True G2045272
XM_036964877.1 mRNA upstream 18775 5798613 ~ 5801513 (+) True snrpa
XM_021587364.2 mRNA upstream 25850 5769612 ~ 5794438 (+) False LOC110507392
XM_036964869.1 mRNA upstream 25850 5777019 ~ 5794438 (+) False LOC110507392
XM_021587365.2 mRNA upstream 25850 5783834 ~ 5794438 (+) True LOC110507392
XM_036964874.1 mRNA upstream 56032 5757600 ~ 5764256 (+) True LOC110507055
XM_036964866.1 mRNA downstream 1957 5822646 ~ 5870186 (+) True LOC110507396
XM_036964871.1 mRNA downstream 54002 5874691 ~ 5896125 (+) False LOC110507397
XM_036964870.1 mRNA downstream 54002 5874691 ~ 5896127 (+) False LOC110507397
XM_036964872.1 mRNA downstream 54002 5874691 ~ 5896127 (+) False LOC110507397
XR_005039971.1 mRNA downstream 54002 5874691 ~ 5896127 (+) False LOC110507397
TU2337845 other upstream 1127416 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1129161 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1129161 4685915 ~ 4691127 (+) True LOC110507374
TU2337325 other upstream 1414162 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 2981361 2834096 ~ 2838927 (+) True G2040882
TU2339431 other downstream 71158 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 72334 5893023 ~ 5896113 (+) True LOC110507397
TU2339435 other downstream 76828 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 674144 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 871855 6692544 ~ 6693044 (+) True G2045655

Expression Profile