RNA id: TU2339559


Basic Information

Item Value
RNA id TU2339559
length 1762
lncRNA type antisense_over
GC content 0.52
exon number 9
gene id G2045227
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5888375 ~ 5896110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGTGCATTTTATTTGGACTTCCCAGTTTGACATCTTATCATAGttggactaaaaacaaacaaaaaaaagactTCATCTGTTACCTCAGAAGAGTACAATCATGTCTCAATTCACAGGGTGAGCAGTTGGGGGGGCATGGCATACAAATTATTTTTCATACTCACACACGGGGCTATTACAACCCCTCAGGatttcattaaatgttcactcatTTGAAATCAAAGAAAATTATGTACACAGATGAAGGTCAAATTTCAATCCGATTCTTTTACATCCTATTCCTGTGATAAGACAGTGATGCCAACACCCCCTtctcagagagagatggaagggacgGGGGAAAGAGCGCTCAGAGATAGAAGAGAAAAAGCAACTTAAGGCCATCATAAAGGAGAGAATATGTATGCAGAATTACTGAGATACTGAAATGTGTCAAGCTGTCAGCAATAACGTACAAAATCCGTCACTCATAGCAAACTCCGGCCTCCAATTCAGTTCCTCCATtttcctttctccatctctctaaatcagtctctctctaccactcttcCATTCAGGACATGGTCCCccactcctctcatctcttcACTGGAAGAGTAggcagaggagagggtgaggaggggtgtgGGGGTTGGTGAGTCCCAACGGTATGTTTAGTATCGGTAATATGGACTCCTCGACCGGGAACGGGACCTCCTTCTGGATGAGCTGTGGTCGCGACCATATTTAGATGGGGAGGGCGAGTGGCTTTGTCGTCCGTACTGTCTCTCCCActcgtccctctctttctcccgacgCTCACGctccttCATGCGGATCTTGCGTGCCATGGCTCTGAGCTCTCCCTCGCGCTCCGCTCGCTTATTTTCCTGCTGAGTGACTTTCGCCTGGGCTGCTTTCTTATCCGCCTTGGACTGCCTGTTGAGGGCCTTCTGCATGCGTATCTTCAGCTTCTCCTGCGGGGTCATCTTGGGTGACTTTGGCAGCTCCTGTCTCTTTACCACCCGGAGTATCAGgcTTTCTCAACTTGTCACAGAGAGCAGTGGCAGAGGGTGGGCCTCCTCtgtgtgagggggagggggagcagcTGGGCTGGGGGGACTGGGAGGGGCTAGGGCTGCTGCTGACCCCCCTCCGATGCCCTCCTGAAGTCCGTCTACCCCCCCCGGGCCTGGCACGGTCCCCCTGCCGAGAGTTAGAGCTGGACCGTGTGCGTCTGCGTGCTGCGAAGCGACGACCCacgtccctgtctctgtctctgtcccgttCTCGCTCCCTGTCCCGGTCATTGGAGCGTGACTGTGTCCGGTCGTATCTCCTCCGTGACCCCCCTCCTCCGTTGGCTCCTCTGCCCCGGGACCGTGAGTCGGAGCGCCGCCTCGACCGGGAATGtcgtccatccctccctcctccgtgGCGTCTGTCGCGGCGTGAGTGAGAGGAGGAACGAGAGGAGGAGCGATGAGTGGAagagtgggaggaagaggaggaagggctGGAGGAAGAGCGGCGTCTGctgaacagagagacacacagatgtGTTTAGCGACAACCCACGAGCTGCTCTAATCCTGCCTGCTTTGACTCAGTTTGTATTTGTTTTGATCTACTTCATTTCTTGTTAGGCTGCTAGTAATACTACAGTACCGTACATTGTTTTTGgtcatatcatcatcatcatgtaacCACACACAGGTAGAGCTCAGGACCGTCTGCTACTTTGTGAACCATACCGAACAGACAGATGGCGTACATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339548 lncRNA downstream 17507 5870872 ~ 5871086 (-) True G2045224
TU2339546 lncRNA downstream 18499 5868908 ~ 5870094 (-) True G2045223
TU2339517 lncRNA downstream 63090 5825289 ~ 5825503 (-) True G2045204
TU2339516 lncRNA downstream 63355 5825009 ~ 5825238 (-) True G2045203
TU2339515 lncRNA downstream 65047 5822688 ~ 5823546 (-) True G2045202
TU2339571 lncRNA upstream 1384 5897494 ~ 5904911 (-) True G2045235
TU2340098 lncRNA upstream 41754 5937864 ~ 5938243 (-) True G2045707
TU2340100 lncRNA upstream 44931 5941041 ~ 5941284 (-) True G2045709
TU2340103 lncRNA upstream 48970 5945080 ~ 5946264 (-) True G2045712
TU2340104 lncRNA upstream 51176 5947286 ~ 5947734 (-) True G2045713
XM_021587366.2 mRNA downstream 90101 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587367.2 mRNA downstream 90101 5795135 ~ 5798492 (-) True c27h19orf54
LOC118944669 mRNA downstream 121761 5759611 ~ 5766832 (-) True LOC118944669
XM_021587362.2 mRNA downstream 154228 5720390 ~ 5734365 (-) True LOC110507390
XM_021587361.2 mRNA downstream 178504 5679726 ~ 5710089 (-) True LOC110507389
XM_036965171.1 mRNA upstream 172314 6068424 ~ 6105009 (-) True LOC110507406
LOC110507409 mRNA upstream 326817 6222927 ~ 6224524 (-) True LOC110507409
XM_021587394.2 mRNA upstream 332003 6228113 ~ 6235871 (-) False LOC110507410
XR_002471123.2 mRNA upstream 435167 6331277 ~ 6334270 (-) False LOC110507423
XR_002471124.2 mRNA upstream 435167 6331277 ~ 6334270 (-) False LOC110507423
TU2339541 other downstream 18454 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 346960 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1474170 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1509164 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1540184 4343599 ~ 4348409 (-) True G2043460
TU2340276 other upstream 336505 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 593612 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 606305 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 606305 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 1096273 6992383 ~ 7028235 (-) True LOC110507058

Expression Profile