RNA id: TU2340104


Basic Information

Item Value
RNA id TU2340104
length 449
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2045713
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5947286 ~ 5947734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagatagaaaagagggagagaaggaggtagtggtggagagaggggggcagcagACATGGTTGGTAGATTAAAAGCCATGTCATTGTCTAACTAATGAAAATgtgtagttaaaaaaaaaaaaactttacaatAAAATACTCACCTTTGGAGGAacctgcagaaacaggaaagaTGTCAGATTAACTGAAAATGTAGAACATTCACATTCACAGCACACACAGGGACAACAcattttccctttctctctcaccctgtaGATATGGAAGGCGATGTGGAGGAAGTTGattttctccttctttctccggTCTTTCTGCAGTAGTTCCACCAGCACGGTGCACTGCTTTGCCTTCTCCTTCTGCTTCTCTGCCACCTTCTTCTCCCCCGGGGTCATCTCTATATCATCATCATGCTCGGCAAGGACAAGCTGGAACTGGGGATTCTTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340103 lncRNA downstream 1022 5945080 ~ 5946264 (-) True G2045712
TU2340100 lncRNA downstream 6002 5941041 ~ 5941284 (-) True G2045709
TU2340098 lncRNA downstream 9043 5937864 ~ 5938243 (-) True G2045707
TU2339571 lncRNA downstream 42375 5897494 ~ 5904911 (-) True G2045235
TU2339559 lncRNA downstream 51176 5888593 ~ 5896110 (-) True G2045227
TU2340108 lncRNA upstream 824 5948558 ~ 5948947 (-) True G2045717
TU2340109 lncRNA upstream 1278 5949012 ~ 5949246 (-) True G2045718
TU2340110 lncRNA upstream 1830 5949564 ~ 5949817 (-) True G2045719
TU2340114 lncRNA upstream 5951 5953685 ~ 5953998 (-) True G2045723
TU2340116 lncRNA upstream 13724 5961458 ~ 5961988 (-) True G2045725
XM_021587366.2 mRNA downstream 148794 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587367.2 mRNA downstream 148794 5795135 ~ 5798492 (-) True c27h19orf54
LOC118944669 mRNA downstream 180454 5759611 ~ 5766832 (-) True LOC118944669
XM_021587362.2 mRNA downstream 212921 5720390 ~ 5734365 (-) True LOC110507390
XM_021587361.2 mRNA downstream 237197 5679726 ~ 5710089 (-) True LOC110507389
XM_036965171.1 mRNA upstream 120690 6068424 ~ 6105009 (-) True LOC110507406
LOC110507409 mRNA upstream 275193 6222927 ~ 6224524 (-) True LOC110507409
XM_021587394.2 mRNA upstream 280379 6228113 ~ 6235871 (-) False LOC110507410
XR_002471123.2 mRNA upstream 383543 6331277 ~ 6334270 (-) False LOC110507423
XR_002471124.2 mRNA upstream 383543 6331277 ~ 6334270 (-) False LOC110507423
TU2339541 other downstream 77147 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 405653 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1532863 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1567857 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1598877 4343599 ~ 4348409 (-) True G2043460
TU2340276 other upstream 284881 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 541988 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 554681 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 554681 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 1044649 6992383 ~ 7028235 (-) True LOC110507058

Expression Profile