RNA id: TU2340421


Basic Information

Item Value
RNA id TU2340421
length 209
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G2046000
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6496260 ~ 6496468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAATGTTTATGGccaatggctgatgagcaccgatAAGTTTTATTTAGTAACGATAAGTATTGAAAAGGATTTTCCATTAGATTGCCAACTTGatgcatgatgatgactgcttgtcaagcttgctagctaagattttgaaaggatgatgttgacatgatcagtccaataaAAGCTAaggtagatataatgtgatttgacgtcgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340311 lncRNA downstream 162034 6331620 ~ 6334226 (-) True LOC110507423
TU2340287 lncRNA downstream 231052 6263157 ~ 6265208 (-) True G2045878
TU2340288 lncRNA downstream 249384 6245005 ~ 6246876 (-) True G2045879
TU2340275 lncRNA downstream 270371 6225187 ~ 6225889 (-) True G2045869
TU2340106 lncRNA downstream 429732 6062148 ~ 6066528 (-) True G2045715
TU2340433 lncRNA upstream 22007 6518475 ~ 6518688 (-) True G2046009
TU2340438 lncRNA upstream 28468 6524936 ~ 6525187 (-) True G2046014
TU2340445 lncRNA upstream 38838 6535306 ~ 6535568 (-) True G2046021
TU2340446 lncRNA upstream 39216 6535684 ~ 6536012 (-) True G2046022
TU2340447 lncRNA upstream 40369 6536837 ~ 6537093 (-) True G2046023
XM_021587407.2 mRNA downstream 5472 6489704 ~ 6490788 (-) False LOC110507421
XM_021587404.2 mRNA downstream 28913 6456398 ~ 6467347 (-) True bmp16
XM_036965560.1 mRNA downstream 76548 6367043 ~ 6419712 (-) False LOC110507413
XM_036965561.1 mRNA downstream 76548 6367043 ~ 6419712 (-) False LOC110507413
XM_036965562.1 mRNA downstream 76548 6367043 ~ 6419712 (-) True LOC110507413
XM_021587403.2 mRNA upstream 5316 6501784 ~ 6512110 (-) False LOC110507418
XM_021587411.2 mRNA upstream 113978 6610446 ~ 6672160 (-) True ptgir
XM_021587414.2 mRNA upstream 192053 6688521 ~ 6694020 (-) False LOC110507427
XM_036965487.1 mRNA upstream 192162 6688630 ~ 6693337 (-) False LOC110507427
XM_036965486.1 mRNA upstream 192162 6688630 ~ 6693594 (-) False LOC110507427
TU2340414 other downstream 5141 6489722 ~ 6491119 (-) True LOC110507421
TU2340276 other downstream 260738 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 626121 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 954627 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 2081837 4414065 ~ 4414423 (-) True G2043518
TU2340423 other upstream 5947 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 5947 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 495915 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 685617 7182085 ~ 7307023 (-) True LOC110507059
TU2341242 other upstream 946205 7442673 ~ 7468494 (-) False fxyd6

Expression Profile