RNA id: TU2340811


Basic Information

Item Value
RNA id TU2340811
length 3211
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G2046345
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7245806 ~ 7251575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGAATGTGCGGGTGCCTgtgattttttgtgtgtgtgtgtgtgcgcgcatacaGAGCAGTGTGGTTCTGTGTTTTCCACTTCCCACGAAGCATCCTACTGCGCACTCCACCATTTGGATCTGTCAGAGGGTACAGGATCTCTCTTTCACGGCTGGACCGAGGACAGTAAGGGAAATCAGCAACATCACCGCGGCCTATCCCAAGCATCAAGGAATAGTTGTCACGATGATAGTCACCATGTTAACAGCTATGTACATGGTGGTCAGAGTAGTAGAAAAGATAGGAGTGCTATTTGCTCGCAGTGATCCTCCGTTGCCTTTCCTGGTGACCCACCCTCTGCCCTGGCAGGTGCACCACGTGTCACAAAAAAGGAGGAGCAGCGCAACAGCTGAGTGCGACGGCCAGACGAGGAACAGCGTAGGAGTGTTCAGAAAGAGTGAGTCTGAGACCAAACAATGTTTGaaagagtgttttttttttaaaaatgtgcaaATCTAGAAAACACTTCCCAGGTGCTGAATCCGAGAGGAAAAAAAtgtagatatatttttttaattggcaCATTGGTATGCTGCTCCCACGGTGTTGAATGAGAAATGGACAAAGGTTTGACTAGGCCTTCCTCATTACAACCCATTAACTGGATGAGACATCCTCTTCTCTTTAAAACACTTCGGGAGCAGCGTACGAGTGTGTGGATTCATATTTTTCTTATCTATGACACTGAACAGTCCACGGCAATATATCTAAAGTAATGAAGTATAATCACCTACCCACATAGAGGCTTTGCTACATATAATACGTATAACATCCTACATATAACTTCATAACCCCTGACGTTAAAGACCACTCGTGCCTTACTACTCATGTACTTGCTACATTGTTACACACAGTAAATTCGGACATCTTCCCCAATGCAACGCTGGCTGTTGCTGTTGCCACTTTGACTGTACCCTGTCTCCTGACGTGCGATCGGAAAGACTCTGCGTGCGGCAACGGGTGTGCAGCGGCGCCTCTCAGCCCCACTCTGCCCGTGGAGAAAGCTGCCGCCACCATTCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAACCACACCCGCACCACCGGAGCTCTGcatgacagacagacggacacaaatacacaaacagacagacaagacagagtcCTCTCTGAAATGTAAAGAGCAGAGGACCAAAGATGTCATCTAACTCCGTTAGCCATTTTTCATAGCATGTATACCAAAGGAAATAGCATAGACATAGATTGACTTTATATGAAagaccagtcaaacgtttggacacacctgctcattcaagtattttctttatttttgctattttctacattgtagaatattaatgaagacatcaaaactatgaaatatcacaaatggaatcatgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttagattcttcaaagctactttgccttgatgacagctttgcacactctttcaaccagcttcacctggaatgcttttacaacaatCGTGAAAGAGTTCCAACAtttgctgaacacttgttggctgcttttctttcagtctgcggtccaactcatcccaaaccatctcaaatgggttgaagtcaggtgattgtggagaacatgtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcatagtcctgttgaaaaacaaatgacagtcccactaagcacaaaccagatgggatggcgtattgctgcagaatggtaaccatgctggttaagtgtgccttgaattctaaataaatcactgacagtttcaccagcaaagcacccccaccccatcacacctcctcctccatgcttcacggtaagAACCACacttgcggagatcatccgttcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctctaatttggactcatcagaccaaaggacagatttccacaggtctaatgtccattgcccgtGTCACTTGCAAGTCTCTTATttttattgatgtcctttagtagtggtttctttgcagcaattcaaccatgaaggcctgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttgcttgaactcatttatttgggctgcaatttctgagtctggtaactaatgaacgtagcctctgtagcagaggtaactctgggtcttcctttcttgtggcggatCTCATTGAGAGCAAGTTTAAACACAGCAGgtcatggtttttgcgactgcacttgaggaAACTTTCCAAGTTCTTGAAATTACCTTCAtggcttaaagtaatgacggactgtcgtttctctttccttatttgagctgttaccaaatagggctatcttctacaTACCacccactaccttgtcacaacacaattaaATTGCTCAAactaccacatgaagttgattgagagaatgccaagtgtccaaagctgtcatcagggttggctactttgaagaacctcaaataaaaaaaaatatttttgatttgtttaacacttttttggttactacaatgactccatatgtgttcatagtgtttatgtcttcactattattatacaatgtagaacatagtaaaaaatcAACTCTGGAATTGGTACGTGTGtccaaattttgactggtactgtgtgtcgaACATGACACAGACATTCAATCACTCATTTAAGTGACAAAATGTTACACACATCCTGTGTTTCACTATGTGACTAAAAATATATGTATACATGAATCATAGGTCCTTTATATGCTTATCGACATGTATTTGTGAAGATATTTacgtgcggcaggtagcctagtggttagagcgttgggcaagtaaccaaaaggttgttagatcgaatccctgagctgacaaggtaaacatctgtcgttctgccccctgaacaaggcagttcacccactgttcctaggccgtcattgtaaataagaacttgttcttcactgacttgtctagtttaataaaggttaaataaaatgtgcgAGAGTATGTTTGCATGTGTGCGTCAGCATCTGTGTGAGAGCATGCACATTGTACTGTATGCATTACAGTACTATCAAATAGATGGATTGTAAAATAACATATATGTCCAACAAACTCCATTAAACCCCTCAGTAATACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340782 lncRNA upstream 144769 7098952 ~ 7101037 (+) True LOC110507436
TU2340797 lncRNA upstream 148777 7096823 ~ 7097029 (+) True G2046332
TU2340779 lncRNA upstream 160643 7084688 ~ 7085163 (+) True G2046325
TU2340713 lncRNA upstream 172835 7008556 ~ 7072971 (+) True G2046263
TU2340764 lncRNA upstream 186288 7058748 ~ 7059518 (+) True G2046310
TU2340933 lncRNA downstream 170047 7421622 ~ 7421912 (+) True G2046463
TU2340934 lncRNA downstream 170437 7422012 ~ 7422225 (+) True G2046464
TU2340941 lncRNA downstream 177966 7429541 ~ 7431697 (+) True G2046471
TU2340942 lncRNA downstream 180475 7432050 ~ 7432444 (+) True G2046472
TU2340943 lncRNA downstream 181220 7432795 ~ 7433133 (+) True G2046473
XM_021587433.2 mRNA upstream 36278 7197450 ~ 7209528 (+) True LOC110507440
XM_036964809.1 mRNA upstream 62369 7135522 ~ 7183437 (+) True LOC110507439
XM_036964808.1 mRNA upstream 112544 7107965 ~ 7133262 (+) True LOC110507437
XM_021587427.2 mRNA upstream 144549 7088048 ~ 7101257 (+) False LOC110507436
XM_036965631.1 mRNA upstream 271177 6936909 ~ 6974629 (+) False LOC110507056
XM_021587445.2 mRNA downstream 246415 7497990 ~ 7502256 (+) False LOC110507445
XM_021587444.2 mRNA downstream 246417 7497992 ~ 7502256 (+) True LOC110507445
XM_036964695.1 mRNA downstream 264249 7515824 ~ 7531443 (+) False LOC110507446
XM_036964692.1 mRNA downstream 266662 7518237 ~ 7531443 (+) False LOC110507446
XM_036964693.1 mRNA downstream 269258 7520833 ~ 7531443 (+) False LOC110507446
TU2340054 other upstream 525114 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 552762 6692544 ~ 6693044 (+) True G2045655
TU2339902 other upstream 750672 6494833 ~ 6495134 (+) True G2045522
TU2339435 other upstream 1338567 5897517 ~ 5907239 (+) True LOC110507398
TU2339420 other upstream 1349693 5893023 ~ 5896113 (+) True LOC110507397
TU2340853 other downstream 5056 7256631 ~ 7258230 (+) True G2046384
TU2342940 other downstream 1355918 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 2156050 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 2536231 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 3027535 10279110 ~ 10282186 (+) False LOC110507067

Expression Profile