RNA id: TU2341003


Basic Information

Item Value
RNA id TU2341003
length 213
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2046526
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7512567 ~ 7512779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAAAGACACATGAAACCTAGGTTGTATGATGAATGATTTCTATGAACTGGTTCCCGTCAACAATTAAAGAAATGTAAGTTAAGAAAAGACAcacaacatacagtgcatttggaaagtattcagatctttttccacattttgttacgttacagccttattctaaaatgaattaaatagtccccccccccccctcatcagtctacacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340944 lncRNA upstream 77045 7433976 ~ 7435522 (+) True G2046474
TU2340943 lncRNA upstream 79434 7432795 ~ 7433133 (+) True G2046473
TU2340942 lncRNA upstream 80123 7432050 ~ 7432444 (+) True G2046472
TU2340941 lncRNA upstream 80870 7429541 ~ 7431697 (+) True G2046471
TU2340934 lncRNA upstream 90342 7422012 ~ 7422225 (+) True G2046464
TU2341052 lncRNA downstream 93256 7606035 ~ 7606235 (+) True G2046575
TU2341056 lncRNA downstream 98579 7611358 ~ 7611567 (+) True G2046579
TU2341070 lncRNA downstream 114457 7627236 ~ 7627632 (+) True G2046592
TU2341071 lncRNA downstream 115152 7627931 ~ 7628147 (+) True G2046593
TU2341073 lncRNA downstream 117043 7629822 ~ 7630045 (+) True G2046595
XM_021587445.2 mRNA upstream 10311 7497990 ~ 7502256 (+) False LOC110507445
XM_021587444.2 mRNA upstream 10311 7497992 ~ 7502256 (+) True LOC110507445
XM_021587433.2 mRNA upstream 303039 7197450 ~ 7209528 (+) True LOC110507440
XM_036964809.1 mRNA upstream 329130 7135522 ~ 7183437 (+) True LOC110507439
XM_036964808.1 mRNA upstream 379305 7107965 ~ 7133262 (+) True LOC110507437
XM_036964695.1 mRNA downstream 3045 7515824 ~ 7531443 (+) False LOC110507446
XM_036964692.1 mRNA downstream 5458 7518237 ~ 7531443 (+) False LOC110507446
XM_036964693.1 mRNA downstream 8054 7520833 ~ 7531443 (+) False LOC110507446
XM_036964694.1 mRNA downstream 8054 7520833 ~ 7531443 (+) False LOC110507446
XM_036964691.1 mRNA downstream 8071 7520850 ~ 7531443 (+) False LOC110507446
TU2340853 other upstream 254337 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 260992 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 260992 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 791875 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 819523 6692544 ~ 6693044 (+) True G2045655
TU2342940 other downstream 1094714 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 1894846 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 2275027 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 2766331 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 2766331 10279110 ~ 10282483 (+) True LOC110507067

Expression Profile