RNA id: TU2341052


Basic Information

Item Value
RNA id TU2341052
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2046575
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7606035 ~ 7606235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACGTAAAACCGTTCCATGTATTTGACCTATTCCACAATTATTAACACAcccgattcaacttgtcaactaatcatcaagcacTTAAATAGGTCAATCAGGTCAGCATAATTGTGAAATGTCTGGGGGCCCAGAGGTTTGAAaaactgtctgcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2341003 lncRNA upstream 93256 7512567 ~ 7512779 (+) True G2046526
TU2340944 lncRNA upstream 170513 7433976 ~ 7435522 (+) True G2046474
TU2340943 lncRNA upstream 172902 7432795 ~ 7433133 (+) True G2046473
TU2340942 lncRNA upstream 173591 7432050 ~ 7432444 (+) True G2046472
TU2340941 lncRNA upstream 174338 7429541 ~ 7431697 (+) True G2046471
TU2341056 lncRNA downstream 5123 7611358 ~ 7611567 (+) True G2046579
TU2341070 lncRNA downstream 21001 7627236 ~ 7627632 (+) True G2046592
TU2341071 lncRNA downstream 21696 7627931 ~ 7628147 (+) True G2046593
TU2341073 lncRNA downstream 23587 7629822 ~ 7630045 (+) True G2046595
TU2341556 lncRNA downstream 40542 7646777 ~ 7647040 (+) True G2047042
XM_036964695.1 mRNA upstream 74592 7515824 ~ 7531443 (+) False LOC110507446
XM_036964692.1 mRNA upstream 74592 7518237 ~ 7531443 (+) False LOC110507446
XM_036964693.1 mRNA upstream 74592 7520833 ~ 7531443 (+) False LOC110507446
XM_036964694.1 mRNA upstream 74592 7520833 ~ 7531443 (+) False LOC110507446
XM_036964691.1 mRNA upstream 74592 7520850 ~ 7531443 (+) False LOC110507446
XM_021587455.2 mRNA downstream 613609 8219844 ~ 8222436 (+) True LOC110507452
XM_036965591.1 mRNA downstream 681213 8287448 ~ 8292186 (+) True LOC110507457
XM_021587462.2 mRNA downstream 1000315 8606550 ~ 8741529 (+) False si:cabz01090165.1
XM_021587463.2 mRNA downstream 1182361 8788596 ~ 8791813 (+) True LOC110507459
XM_036965105.1 mRNA downstream 1352171 8958406 ~ 9033108 (+) False LOC110507061
TU2340853 other upstream 347805 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 354460 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 354460 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 885343 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 912991 6692544 ~ 6693044 (+) True G2045655
TU2342940 other downstream 1001258 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 1801390 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 2181571 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 2672875 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 2672875 10279110 ~ 10282483 (+) True LOC110507067

Expression Profile