RNA id: TCONS_00005196


Basic Information

Item Value
RNA id TCONS_00005196
length 1674
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_002803
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26502334 ~ 26512993 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GaaatataacaaattaattaagtgCAAGATCAACAGAATGAATAACCACACTGTTTTGAATAGCTCCTAAAATCCCATTACCATCGCAATTTCATGAGTTGTCCCGCCCGTTTTGGGTGACTGGCAGCTTCACCAACCAATGATTTGAAATCCTTAAATTCAACCGACCAATCAGGTAAAGACATCCAGGAAACCGGCGTTTCATAAGAGGTTGCGAGATGTCATGTTTCATAAACAAAACAGAGAACAACTGTTAACTGTCAGGGAGCTTGCAGAAGAGTCTCGGCGGATGAGAGCAAATCTGTCTACATTTGCTTTGATGAAGACGTACGTCCTCAGTATATCTGCGCTGTCCCTCACATCGTCGACGACACTATGAAGCGACTGTACTTCATCGAGCCCGTCGTCGCGATTTACGCGTTTGCCAGTTTTATGCTTTATCCTCTCATCCAGCAGTATGTGTATCGCAGACTGTGGCTGGAGATCACAAACTCGACCTATCCAGTGTCCGAAAACACTTCTCAATGTGCCGCCAACAGCAGCAACCACACCAGCCGACAAGAGgAGGTGCAGAAAGCAGCTTCTCTGTTCTCCATGTACACTGATTTATCCTCCATGATCCCCAGCCTCATCGTGACCCTCCTCCTGGTGTCCTACAGCGATCAGCGTGGCCGAAAGATCACCATTATCATGCCTCTCATTGGCACTCTGATCTACACGCTTTCATTCCTCACCGTCTCGTTCTTCCAGCTCAACCTTTACCTCCTTATTGTTGCCTCATTCGTAAGTGCCCTCTTTGGGGGCATCGGCACCATGTTAGGTGGCTGCTTCTCCTATGTGGCTGATTTGTGTGAAGATGGCAAACAAAAAACCCTTCGGATGGCTGTAGTCGACATGATGATTGGCATGCTGGCAGGTGTAGCTTCAATCTCCACTGGCTACTTCTTACACGCAGCCGGGTTCAACTGGCCGTTTTTTACCTCTGCCATATTTCAGGTCGTTAATTTACTATACGCCATCTTTATTCTGGAAGAAACTAGAGTCATTGATAGATCGGAGACCTTGGCTTGTTGTCAGGCCTTGCGGAATCTGGCATGCAGCATCTACAGCTTGTTTGCTGGAGGAAGTAGACGAAGAACATGGGTTCTTGTGCTGTTGATTATCACCTTTTCCTCCTTGTCTTTTGTCAATACTGGAGGTTTGTCCATATTCACGCTTTATGAGCTCAATGAGCCGCTGTGTTGGACTGAGATTCTTGTCGGATATGGCTCTGCTGCCAGCACATCTATTTTTATTACAAGTTTTGTTGGCGTGTTTTTGTTTTCTCTCTGCCTGCCTAACATCGCCATCGCCTTCATTGGGATGCTTTCAGTCGCTGTTAGCATGTTGATGACCGGCTTCGCCAAGACCACGCTCACAATGTTCCTCGTGAGAATTCCTGCTATGTTTGCCATCATGCCATTCCCTGTCCTGCGTTCGATGATGTCAAAGGTCGTCTCAAAGTCTGAACAGGGAGCGCTGTTCGCCTGTGTGGCCTTCACAGAAACGCTGAGCACCAATGGGTCTGCTGCCAGTTTTAGCAGGATCTATGCAGCCACTGTGGCTTGGTGTCCAGGTTTTGTCTTCCTACTGGGTGCCGGACTCTGTCTCATTCCCATGAGTTTACTGGGGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-100105-2 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC46A3 (solute carrier family 46 member 3).

Ensembl:

ensembl_id ENSDART00000188549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006056 lncRNA downstream 57621 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006055 lncRNA downstream 57679 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006054 lncRNA downstream 362195 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA downstream 362195 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00005171 lncRNA downstream 805433 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006057 lncRNA upstream 323843 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005206 lncRNA upstream 379574 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006058 lncRNA upstream 388279 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00006059 lncRNA upstream 478816 26991809 ~ 26999496 (-) False XLOC_002812
TCONS_00005211 lncRNA upstream 487569 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00005192 mRNA downstream 74624 26268790 ~ 26430168 (-) False XLOC_002801
TCONS_00005194 mRNA downstream 230698 26269532 ~ 26274094 (-) True XLOC_002801
TCONS_00005193 mRNA downstream 231163 26269072 ~ 26273629 (-) False XLOC_002801
TCONS_00005188 mRNA downstream 278564 26202235 ~ 26226228 (-) False XLOC_002800
TCONS_00005198 mRNA upstream 203369 26716362 ~ 26738209 (-) False XLOC_002804
TCONS_00005200 mRNA upstream 203369 26716362 ~ 26744166 (-) False XLOC_002804
TCONS_00005199 mRNA upstream 203369 26716362 ~ 26744166 (-) False XLOC_002804
TCONS_00005201 mRNA upstream 203623 26716616 ~ 26744131 (-) False XLOC_002804
TCONS_00005202 mRNA upstream 203626 26716619 ~ 26729930 (-) False XLOC_002804
TCONS_00005187 other downstream 302269 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 363711 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 1005318 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 2049060 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 2121411 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005203 other upstream 230603 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 493278 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 656963 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 901253 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1685901 28198894 ~ 28199041 (-) False XLOC_002823

Expression Profile

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