RNA id: TU2343269


Basic Information

Item Value
RNA id TU2343269
length 1681
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G2048683
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8823661 ~ 8825625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGTTTCAATTTATTTATCAGGCTGTAGAGAGCATAAGAGGATCCATGTTATCAAGTTTCTGTAtatcaatttaaaaaatgtgcaCCCCAGTTTCAATTTATTTATCAGGCTGTAGAGAGCACAAGAGGATCCATGTTATTACGTTTCTGTATATCAATTATTCATAAAAGCAATTGAAGCATGGCAACGCAACACCATTTTAGCATGATATTTCTAGTAACAAGCCTACATTTCAAATGAAAGTTAGTAATTATAACATCTAAACCTCTGTATATTTTTTTCCTGTTCCCTTTTTCCAGTTTGAACATGAATATCAATTACAGTGTCATATGCTCGTGTTTTTTTGTCAAGCTTATTTAAAAAAGCATCAGCTGTAATGTAAGATTTCTTAATGACTTTGTTACATGATAGAAAGCCTTTATTTTGGGCTTCAGTTTGTGTCACCAAGACGTCAGACATGTACAACATTTTTCTCCTTCCTATTTACAAACACATCCACAAATCTGTTTAAATACATCATCCTATGAATGAGGATAGAGTGCTTTTTTTTGTGTTCACTGGACGGCGCAGGCAAATTATGCTAAAGCCTTTCAGTCAACGTAAGTGTGTAACGCAAGAACGCAGTTAGTCAAAATGGCTTCCCTGCGTAGTTGTGACACCTTACAAATTTTAGGCTGCCAATTCTGCAATGCAATCCTGCAGGACAGCCAATTTGCGTAGCTAATTGCGTTGCATACTTACATAGGCTATACATTTGCCTTAACTCTGCTTCCATCCTTGGCTCAGTCAAAGCTTTGGAGATTGAGGGCCCAAGCTAGATTGCTAATATACAACCATATGTTCACAAATGCTTAGAAAACATAATTGACTAAATTACAGTATACAAAACATGACAAGCCAGTCAATTATTGTTTTTAGACAATTACATTAAAAAACTATACAAAAAGACAAGTCAAACCCTACTGTTACAGTTGTGCTGTGAGACTTGGCAATGCTGATTCCACAAagccatgtgtgtgtttttatttatctGTGCAAGTGTCCCGCACCTCCGCAGCGAATGGTTGGGAGAGGTGATGGTCAGTGAacagtctcatctttccatagagagGTAGTGTCTTGTCAGATGAAACGCTCCTGGTCAGCTCGTGGTCTTACCCGACCAGGTGATAGGTCAACCAGTACATGAATATGGGCTGGGCGGCTGCGATGGACATGGTCAGGTACATCCTCAGCTGGTTCCTGGCCCCGTGGATCAACACGCCTTGGGCTGCTGCCTCAGACAGGAGCTTTAGTCTCAATGTGCGGATCATGAAGATGAAGATGGATATACAGCACCACAGCAGCGTTAGGTAATAACCCGTTCGACCAAATAGTAACCCTGCCACGACCCCTACAATCATCCCCACATATTTATATCCGGAGAAGGCCACAAGGTCGATGGTGGTGAGGTCTGTGTTGACTGTGACCAGGTAGAGACTGAGGAGGACAGCCAGCACCTCCATGATGAGCCACACCAGGGCCGAGCTGGCCTGCATGCCCAGGATCTCAGGGGTAAACCTAGAGACAGACGGGAGGTTGAGATAGATACAAGTTTCAGGATACTATTTATACAGAGAACTGGGAAGAAAGTTGCAAAAAAGTGAGTGGAAGTGGACCACCTTTACCTGTTCTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2343254 lncRNA upstream 9659 8813735 ~ 8814002 (+) True G2048669
TU2343101 lncRNA upstream 14370 8808811 ~ 8809291 (+) True G2048524
TU2342941 lncRNA upstream 82127 8740067 ~ 8741534 (+) True si:cabz01090165.1
TU2343036 lncRNA upstream 91536 8731798 ~ 8732125 (+) True G2048462
TU2343035 lncRNA upstream 93529 8729827 ~ 8730132 (+) True G2048461
TU2343419 lncRNA downstream 83696 8909321 ~ 8909563 (+) True G2048803
TU2343422 lncRNA downstream 85749 8911374 ~ 8911576 (+) True G2048806
TU2343476 lncRNA downstream 128148 8953773 ~ 8954096 (+) True G2048859
TU2343500 lncRNA downstream 147494 8973119 ~ 9067961 (+) False G2048873
TU2343499 lncRNA downstream 231505 9057130 ~ 9061110 (+) True G2048873
XM_021587463.2 mRNA upstream 31848 8788596 ~ 8791813 (+) True LOC110507459
XM_021587462.2 mRNA upstream 82132 8606550 ~ 8741529 (+) False si:cabz01090165.1
XM_036965591.1 mRNA upstream 531475 8287448 ~ 8292186 (+) True LOC110507457
XM_021587455.2 mRNA upstream 601225 8219844 ~ 8222436 (+) True LOC110507452
XM_036964696.1 mRNA upstream 1292218 7521671 ~ 7531443 (+) True LOC110507446
XM_036965105.1 mRNA downstream 132781 8958406 ~ 9033108 (+) False LOC110507061
XM_036965106.1 mRNA downstream 132781 8958406 ~ 9033108 (+) True LOC110507061
XM_021587471.2 mRNA downstream 211343 9036968 ~ 9043679 (+) False esrrd
XM_021587472.2 mRNA downstream 211357 9036982 ~ 9043679 (+) True esrrd
XM_021587473.2 mRNA downstream 297971 9123596 ~ 9126312 (+) True LOC110507468
TU2342940 other upstream 99358 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2340853 other upstream 1565431 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 1572086 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 1572086 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 2102969 6719764 ~ 6720692 (+) True G2045665
TU2344007 other downstream 582000 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 962181 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 1453485 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 1453485 10279110 ~ 10282483 (+) True LOC110507067
TU2344952 other downstream 1563376 10389001 ~ 10390901 (+) True LOC110507523

Expression Profile