RNA id: TU2343500



Basic Information


Item Value
RNA id TU2343500
length 2815
lncRNA type read_through
GC content 0.41
exon number 4
gene id G2048873
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8973119 ~ 9067961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGGTtttaagTTGGATCTGTTTTATACATTATTATTCATTCATTCACCTTTTCCATGTACGTAAGTGTGTCACCCCATTATTGTACAGTGATTGTATAGCGACGGGATGAGACTTAAAACATGCAGAGCAGTATCATAATAGCGACTATGTAATTCATGCAACTTCTGTGTCCTGATATTGTGATGTTTTCCATTGATGTTGTACAAATGAACCATTTGCCCCATGGACATTTCAATttgttgaacccccccccccaaaaaaaatcattTTGTCCTTttcacagcaaaaaaaaaaactaacgTAATTCTTTCTTTACAAAAAATACATTAAGCAATTACATATTGTACAGGTCATCAAGCTGTTGAAATTGGCAAAACATCCATTCAGTAGTTCCCTAAAAACAGTGGTGCTCTAGGGTCAAAGGTCAGGAAATGAACAGTAGGTGTTGAGCATTGACTTAGTTTAGCAACTAACAATGGAACATCCTGGACGAAAACAGCAACGAAATCATTATTCcctgaaatgaaaaaaataacgtATTCTAGAAAATAGGGATTTGAGTTTATAACGGCATTAGACTATTGATTTGTAACGGTTGCGGTGTGAATGCTTTCATGAAGGAAGCACTCCAGGACTTAACGCACATCAGACATTACAGATGCCCAGTTACGCAATGTTCTAACATTACTGAAACATCATGACTGCACAGCTAACACAGAAGCATTGTATCAATAATGAGATTCCTCTCACAAGTCTCCCACTGACACGTTAATGCTTGTGTGTATCAACTGCAGGTTATAAAATTGTGCTTTCTAGTCATTAACCAACATCCAGCTGGTTTGTAATTTGAAAGTCTATAAGCTCAAATTGCCCTCTGTGCGACAGAAAAGTACAGGATAACATGGATCGGGCCCTTGGCCATGACAACAGACGGGCTGGCCCACATTTGGAAAAATGACTACTGGTCATTTATCCAGATAGCTACTGAATGAAACCTTAGCATGAATAATTGTATAGGCATGTTTGGCTTTAGGATGTGATCGTACCTCATGCTCTGTAGCTGGAAGTCCAGCTGTTAGTAAAGTGTAACAAGCAAGACAAGAGAAACAGCCATATGAAATCTCATATCACGGTTGAACATGATACGCTCACACTTTTCAGGCTAGTGTACTTCATGTTCATTCATGAAGATAATTCAAACCTCATTCTCCTGTGATCCAATAAACACATTTCCCTCTAGGACCCTGAAGCACCACTGCTCCTCAAGCAATAGCACTGTGCAATGGGGGAGCGTTTTAGTGCAAAGGAAAAGTTGCATATAAATTCTCATTTCGCATCAACAATGCGTTCCTGGCCACCTCCCGAAGCCACCATAATACTTTGACCGCATACCCTCTGTTTAGAGTGAGACTATGGCATACAAATAGGAGATCTGTGACAGGAGTACACAGAGAACGCAATGGTAAGCAACATTTCCAAACAAAGTTACCATTCGGAGACATCCAAATTAGTGTTAAGACAGTTACGTACATCAATTTGAGACCAACTCGTTTTTATTGAGCATATTGTTTTTGGAATGAGACATCCTCCATACGAGCTGCCCAGGCAAGATTAGAGTAGACTTAACAACAGATAGTAGTAAATACTGCACAGTGAAACTCCTGAATGCAAGAATTCAGCAGACTAGCAGTTTATTGCTAGAATCCTCCCCACTACACTATGCTAATTGTACTGTGTGCCACGCAGTCGTGTGTCATACGAGTCTCAAAATTCACCACAGAATCTCATAGATGTCCACAGTGCCCTATCTGAGTGTGTCCTATGtcatgtattgtactgtatttcaCATTCCATGTGATAGTTATGTTCATTCAAAAATAAGTTCTGCTGATCCTTGCCTTGTTGTGTCCAACAAGCGTTATGGATTGCACTGATTTGGCATTCAACGCCTATATAGATGcataaaatgtgttttaaaaaaaacaaggtaGAAAAAGCTACTCAGGAAAGATCTCATGATATTTGCACTGTACTATCTCGTCGCCGTCACTCCTCACTTCTGTACAAATCTCTGATGTAAGGAACAGGCAAAGGATTTGTCCACTAGCTTCCATAATGTAAGACTTCCCGTTACCAAATATGGCTTTGCAGTGCTAAGACAAACAGACAATTGTATTGTATGATGCATGGAGAGGAACAAAGTGAACATCGTTGCTGATAGCTACATACTGTGAGAGGAACATAGGATCGGACTGCTATGCAAAGCCTCTCAACAAGAGATTTATCCCAAGCAAGACATGCATGTGATTCATTCATCCAGAAGCTTTTGTTTACATCCATCTGACATCGACTTGCACTCCTGAGGCCTTGGAGTGACCAATCGGCACCGTATTACTTCTGTGTGGCCCCTGAACTTAGATCCTTGCTGTGTCCTCATCAACTCCTGTGGTTAGTTGAGCTGTTAGAAGCCTGGCCTGTGGAACGGCAGTGCTTGGAAGACTGAGGGAGAACTGAGGACGCAGATGTGAACAAAAAAACCTGAGCTATGAAAACCCTGGGAGTGGTGAGCAgctgaacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacaccagagacagGGTTAGAGACGAATAGTAAACACAGGGTAAAATTGAGGGGTAATGTGTGGAAGCTGAGATTCTGCAGTGAAACTAACTTGGTCATGTAAAACCATGAGCTGGCTTTACAGTGTTGAGTTTCCAGAAGGAGTAAATGTGAGGAGGATAAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2343476 lncRNA upstream 19023 8953773 ~ 8954096 (+) True G2048859
TU2343422 lncRNA upstream 61543 8911374 ~ 8911576 (+) True G2048806
TU2343419 lncRNA upstream 63556 8909321 ~ 8909563 (+) True G2048803
TU2343269 lncRNA upstream 147494 8823661 ~ 8825625 (+) True G2048683
TU2343254 lncRNA upstream 159117 8813735 ~ 8814002 (+) True G2048669
TU2343553 lncRNA downstream 536 9068497 ~ 9068744 (+) True G2048924
TU2343554 lncRNA downstream 1081 9069042 ~ 9069300 (+) True G2048925
TU2343555 lncRNA downstream 1865 9069826 ~ 9070122 (+) True G2048926
TU2343571 lncRNA downstream 29477 9097438 ~ 9098286 (+) True G2048942
TU2343588 lncRNA downstream 53807 9121768 ~ 9122180 (+) True G2048957
XM_021587463.2 mRNA upstream 181306 8788596 ~ 8791813 (+) True LOC110507459
XM_021587462.2 mRNA upstream 231590 8606550 ~ 8741529 (+) False si:cabz01090165.1
XM_036965591.1 mRNA upstream 680933 8287448 ~ 8292186 (+) True LOC110507457
XM_021587455.2 mRNA upstream 750683 8219844 ~ 8222436 (+) True LOC110507452
XM_036964696.1 mRNA upstream 1441676 7521671 ~ 7531443 (+) True LOC110507446
XM_021587473.2 mRNA downstream 55635 9123596 ~ 9126312 (+) True LOC110507468
XM_021587474.2 mRNA downstream 60070 9128031 ~ 9130735 (+) True LOC110507469
XM_021586943.2 mRNA downstream 141793 9209754 ~ 9212063 (+) True LOC110507063
XM_021587493.2 mRNA downstream 203880 9271841 ~ 9273709 (+) True LOC110507479
XM_021587504.2 mRNA downstream 438524 9506485 ~ 9538992 (+) False LOC110507484
TU2342940 other upstream 248816 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2340853 other upstream 1714889 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 1721544 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 1721544 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 2252427 6719764 ~ 6720692 (+) True G2045665
TU2344007 other downstream 339664 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 719845 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 1211149 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 1211149 10279110 ~ 10282483 (+) True LOC110507067
TU2344952 other downstream 1321040 10389001 ~ 10390901 (+) True LOC110507523

Expression Profile