RNA id: TU2344883


Basic Information

Item Value
RNA id TU2344883
length 305
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2050122
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10214644 ~ 10214948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaatgttgtgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2344870 lncRNA upstream 22402 10191987 ~ 10192242 (+) True G2050109
TU2344773 lncRNA upstream 135834 10057431 ~ 10078810 (+) True LOC110507511
TU2344770 lncRNA upstream 191899 10019610 ~ 10022745 (+) True G2050017
TU2344799 lncRNA upstream 206748 10007697 ~ 10007896 (+) True G2050046
TU2344750 lncRNA upstream 241791 9972597 ~ 9972853 (+) True G2050002
TU2344884 lncRNA downstream 4305 10219253 ~ 10219615 (+) True G2050123
TU2344955 lncRNA downstream 97140 10312088 ~ 10371018 (+) True G2050164
TU2344981 lncRNA downstream 161161 10376109 ~ 10377333 (+) True G2050178
TU2345005 lncRNA downstream 245922 10460870 ~ 10462018 (+) True G2050200
TU2345050 lncRNA downstream 300406 10515354 ~ 10515598 (+) True G2050234
XM_036965432.1 mRNA upstream 1039 10193680 ~ 10213605 (+) False LOC110507517
XM_036965433.1 mRNA upstream 1039 10193680 ~ 10213605 (+) True LOC110507517
XM_021587552.2 mRNA upstream 49929 10156689 ~ 10164715 (+) True LOC110507516
XM_036964641.1 mRNA upstream 51256 10156632 ~ 10163388 (+) False LOC110507516
XM_021587553.2 mRNA upstream 51256 10156689 ~ 10163388 (+) False LOC110507516
XM_021586944.2 mRNA downstream 2572 10217520 ~ 10218686 (+) True sebox
XR_005040054.1 mRNA downstream 15757 10230705 ~ 10232923 (+) False LOC110507518
XM_021587557.2 mRNA downstream 15804 10230752 ~ 10233860 (+) False LOC110507518
XM_036965511.1 mRNA downstream 16453 10231401 ~ 10233860 (+) False LOC110507518
XM_036965510.1 mRNA downstream 16875 10231823 ~ 10233860 (+) True LOC110507518
TU2344344 other upstream 426529 9787806 ~ 9788115 (+) True G2049657
TU2344007 other upstream 806073 9407625 ~ 9408571 (+) True G2049339
TU2342940 other upstream 1490341 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2340853 other upstream 2956414 7256631 ~ 7258230 (+) True G2046384
TU2340814 other upstream 2963069 7245806 ~ 7251575 (+) True G2046345
TU2344911 other downstream 64162 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 64162 10279110 ~ 10282483 (+) True LOC110507067
TU2344952 other downstream 174053 10389001 ~ 10390901 (+) True LOC110507523
TU2344947 other downstream 191425 10406373 ~ 10417094 (+) False LOC110507524
TU2344948 other downstream 191425 10406373 ~ 10417295 (+) True LOC110507524

Expression Profile