RNA id: TU2345979


Basic Information

Item Value
RNA id TU2345979
length 1655
RNA type TUCP
GC content 0.46
exon number 3
gene id G2051018
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12127441 ~ 12137799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTGCTTTATTTTGAAAACAGACAttgaaatcattttttttttctcacaattTATCTCCTTAGATTCAAACTGGACATTGCACTCACTGGAACATAGGAAACGTTTTTTAGTTTTGTTTGTTTGATTTTCTTTTTAACATCAGTGCAAGAGTAATTCCAATTCATATCAAACCGTCATAACAACACCAAGGACATCAAAGAGAAGCCACATTTTCTTTTGTATTGTGACTGCGAAAAGTTCCTCTTAGCAGAAGAGTTCCCATGCAAGTTGTTAGATGGTTCATGCTAATCATGTAATTTGGAAGGGGGATTTTAGTTGTGGGGTCAACAACATGTCATAGTACTCATTGTTTTCCGTAAAGTCGTGAAAATCATGTCAGACTTGTTAGTTTTATAAGTGCGGAAGGAGAAGGACCTGTTACTCAAAGAACGTAAACCAAGCTTGATCAACTCAAGCAGAATATGAAAATGTCCTGTCCCGCTTTGTAGGGTTTTGAAACTCAGTTCAAAATGTGGATAGGTCCAACCATCGAATCAATAATGTAAGATACAGAACATACCCAAATCATACCACTTATAGCTTGAACCAAAAAACGCATGTTGGAAACTCTCCCAACGTAAGAAAATCATCGCCACACAAAAAATGACAAACAAATAAAAATGGACTGCCTTCACATTCAGAAGGAGAAGAGTCACCCTTTAAATTCATTTGTAATCATAGTATTTTTTTCTCTATGTTAAACTTTCGCTTGGTCCTCCTTGGACTCCTCCTGGACTGCCTCTGCTGGAGCCTCAGCTGGTTGGGATTCTTCGGCACCATCTTTTTTTGTCTTGTGTTTGGTGAGGCTCCTCCTTATCAGCCGTCTCACTGACAGGAGCAGCAGGCACGTCGGCTTGTTTGGACTCCTCCTGGGCAGCACCACCCTCCACACTCTTTTCAGCACAATCAGTAGAGGGGTTTTGGGCAGAAACCGGAACCTCATTGCTGTCCACCTCTTTGGGCTTCTCCTTGGTGTCGCCGGGCTCCACCTTGGCCTCCTCTTTGGAAGGCTCTGAAGGCGCCGCGGTGGGAGAAGCTGTTGCTGCGGCTACGGGAGAGGTGGCGACAGGGGCAGGAGAGTTTGCTGCCTTTTCTGAGATGGGGCTTTTGGCTTGGCtcgtctcctcctctttaatccCAGGGGGGGCTTTTTCCTCGGCAGCCTGCTCAGCCGCAGTGGGGacgtcctccttctcctcttctccatctgcCATCTCCTTCGTCTCCTCCTCTGGGACAGCTGGACTggcctcctcatcctcctctccatctttcaTTTTTTTCCGGAGTATGTGTCCACGGAAGCTGGCCTGGATTTTGGTGGCCGCCTTGTGGGCTTTGTCCTCTGGTTTCTTCTCATCCTGCTTGATTTCCTGGTCTTCTTATGCAGCACAGCATACTTGTAATatcctttctctcttttcccttctttccttcctttttGCCTTacacttctctctcactccctcgctctcGCGCTCTTGCACACGCTCACTGGCTGTATCAACAGCTGAGTCGCCTAATGCTTTTACTCATCACAatttgcacacacactcactgtctgCCTGCTCGCGCCTCtctctgacttgctggctaacaATGACTACAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2346398 lncRNA upstream 350044 11540455 ~ 11777397 (+) True G2051422
TU2346478 lncRNA upstream 429687 11631891 ~ 11697754 (+) True G2051500
TU2346004 lncRNA upstream 1125152 11001861 ~ 11002289 (+) True G2051041
TU2345955 lncRNA upstream 1173063 10954172 ~ 10954378 (+) True G2050996
TU2345952 lncRNA upstream 1174209 10952999 ~ 10953232 (+) True G2050993
TU2346879 lncRNA downstream 381 12138180 ~ 12138453 (+) True G2051892
TU2346886 lncRNA downstream 4258 12142057 ~ 12174770 (+) True G2051895
TU2346923 lncRNA downstream 69008 12206807 ~ 12209107 (+) False G2051932
TU2346924 lncRNA downstream 69008 12206807 ~ 12209107 (+) True G2051932
TU2346930 lncRNA downstream 76329 12214128 ~ 12216225 (+) True G2051936
XM_021587598.2 mRNA upstream 1708 10971980 ~ 12125733 (+) False LOC110507545
XM_021587594.2 mRNA upstream 1708 11214666 ~ 12125733 (+) False LOC110507545
XM_021587597.2 mRNA upstream 1708 11433978 ~ 12125733 (+) False LOC110507545
XM_021587595.2 mRNA upstream 1708 11681276 ~ 12125733 (+) False LOC110507545
XM_021587593.2 mRNA upstream 1708 11990539 ~ 12125733 (+) True LOC110507545
XM_021586922.2 mRNA downstream 51534 12189333 ~ 12193259 (+) False cd3e
NM_001195174.1 mRNA downstream 51780 12189579 ~ 12191881 (+) True cd3e
XM_021587605.2 mRNA downstream 144519 12282318 ~ 12303781 (+) False LOC110507553
XM_021587606.2 mRNA downstream 144519 12282318 ~ 12303781 (+) False LOC110507553
XM_021587607.2 mRNA downstream 144520 12282319 ~ 12303781 (+) False LOC110507553
TU2345997 other upstream 1133853 10992985 ~ 10993588 (+) True G2051034
TU2345197 other upstream 1349074 10775087 ~ 10778367 (+) False LOC110507540
TU2345199 other upstream 1351573 10775087 ~ 10775868 (+) True LOC110507540
TU2345024 other upstream 1544356 10575710 ~ 10583085 (+) True rap1gap2a
TU2344948 other upstream 1710146 10406373 ~ 10417295 (+) True LOC110507524
TU2347079 other downstream 300160 12437959 ~ 12439478 (+) True nudt8
TU2348584 other downstream 840728 12978527 ~ 12978923 (+) True G2053443
TU2348868 other downstream 1416941 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 2687721 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 3459234 15597033 ~ 15597651 (+) True G2056256

Expression Profile