RNA id: TCONS_00005200


Basic Information

Item Value
RNA id TCONS_00005200
length 2686
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_002804
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26716362 ~ 26744166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACGCGTCACGTGGTGAAGTTTGGGCTCCACAACGCGACCTTAGTGAAATACACCGCCATGTGGTCTGATTGATGTGTCAAAGCACATCATGAGCGCTCGAACTGTAATCTTACACACCGCAAACTGAACGACACTAAAACAGCCTGGGAAGTGGCCTTTGacgttttaatttttaaagaagacagttgttacatttttttctcaCTGCCTTTCCTCTGTCATGGAACAAAGCGCAATGTACACCTGCCAGAGGAGATCGTAATAACGACCAGCACACGGTGAGCATTCAGCAACATTTAATTCCACTGACGTTGAACTAATTTAATTAACATTCATATTCAAATTGCTTGATGAGTTTGTTTGGGAAAGCATTAATGCTAGATTTATGCTGCATGCTGTAACGTTATATGATACTTGATGATctataaacactattttaaaaacaaaaagacatcAGCCTGTTATAAGCAGCACTCTGGTTCCTTTAAGGAGGGGTTGGCCACTGTTTAATAGAAGAGCCAGTTTTAAATGATCGGACCGTTTTGGTGTGAGTTATCATCTGGAATTCTTCATCAAAACTGGGATCTATGAGCGGGAAAGCATTATTAAAGACGAAAGAAGATAAGGATGCAACCAAAGAGCCTCAGCTCAAGGGGATAGTCACCAAACTCTACAGTCGACAAGGCTTTCATCTACAACTCCAAGCTGATGGAACCATCGATGGTACAAAGGAGGAAGATAATAGCTTCGCTATTTTCAACCTCATCCCCGTCGGGCTACGAGTGGTGGCTATTCAGGGCGTCCAGACCAAACTCTACCTGGCCATGAACAATGAAGGCTACCTGTACACCTCTGAGCACTTCACGCCGGAGTGCAAATTTAAAGAGTCGGTGTTTGAGAACTATTACGTGACCTACTCGTCAATGATCTACAGACAACAGCAGTCGGGCCGAGGCTGGTACCTGGGTCTCAACAAAGAGGGTCAAATCATGAAGGGCAACCATGTAAAGAAGACCAAGCCGGCTGCTCACTTCATCCCCAAACCTCTTAAAGTTGCCATGTACAGAGAGCCGTCTCTCCACGACCTGACCGAGTTTTCCCGCTCCGGCAGCGGCACGCCGACCAAGAGCCGCAGCGCCTCGGCCATGCTGAACGGCGGCAAGACTCTGAGTCAGAACGAGTCCACATAACCACCGCTGCCGGACTCCAGCGTCAACTCCAACAGCACAAACGCGTTTACAAGAGTGCGGCGAGAAATGTTTCCTGAAATCACTGTGATGAGAACACAAGTGCAAAACCTACATTGTACAATCTGCAGGTCAACCTCGTGAGATCTAATCAAACCAAGCCATCTTACCGATGTAGGGGTCTGCGGTCCCCCGTTCCCATGTGTAGCATATACAAAGCTCCTACTGAAACACCTACTTTGTGTTTTGCTCCATTTCTTCTTAGGGATGCCTGCAGCTCCATAGTGCTGAGTCAACTACAAAATGACAATAGCAGCTTGTGCGACCCATTTATCGGTATATAGAGGCAGAAATCCCAAAGGTTTTTTGGACATATGATACAAGTCCTTCAGCTcagctttttttgtttgaaagCAGTGGTTCATCGTTGTGTGCTTTTTAGATGAGGCGTTTTGCTTCTCCTTTTTGTCTTTTCAGCTCTTCCCCTCCCCAAACACATTGTTATTCTGCAAATTAAACAGATTTAAGGTTCGGCCTGTCTGCGCACCAAAGATGTCATTAGTCTCTTTGTATGGAGGTAAGTCAATTTGTGTAATTTCAGCTCTCTCAGACAGATAGTTGAGAAAAGCGCGAGAAGCGAATGTCATTTAGTCGGAGGAAATGTATTCGGGAGAGATGAAGGCTACTCgctgtgcttttttatttattttgaggtcTGTTTATGTCTTCCTTTACTTCCTGTCTAATTTGGGAACCCAGCATCTTGGAGAAGTGTCAAATCAGACAGTGTTTAAATTATTGATTAACGTCAAGCCGGTAAGATTTCCGTTACGTAAAAACAGGGCAGGCTTCCTCTTTTTTTCATATAATGAAAGCTTCCATTGCTTTAACAGGGCTAAATCAGCATAAGTAAATAACCCGTCTTTGAAAAGTCGTTCATAGTTTCTAGTCTTCGCTGGTCAGGCAAGCAGCCCAGTTTCTAATTTCAGTCAAACGcctcttttgttttgttgtgtgtatgtactgtatgtatgaagCATATTTAATGCATGGGGGACAATGGACGCTGCATGTTGTGTGGCTTTGTATATTAACTACAATATGGAACCATGTGCTCTAATGGATACTGGAGTAAAatacaaatgtactgtatatatatatgcattttaacCTGCTACCCGCCcgtttattatttgttgtacatttaaaaagctgcactgaataaaatgttttgtatgtTCAGAGCATTCATCGCGTTTAATTATGTTGAGAGACTTGTTTTTGGTACTGTAGCTCTTTTTTATAGCTATATcaatcaacattttttaaagatttgaatGAAGGATTTATGTAAAgatatgcaataaataaaataatgttaaaaataattctgaaaataatgaaatataattcaATTAAAAGGGAAATCAATTGttagttaaaataattttttaaataaataaacaacttaaaGTCTTTCTATTATGGCTTATAGG

Function

GO:

id name namespace
GO:1905150 regulation of voltage-gated sodium channel activity biological_process
GO:0005576 extracellular region cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017080 sodium channel regulator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1793 Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within nervous system development. Predicted to be located in several cellular components, including filopodium; growth cone; and microtubule. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including blood; nervous system; neural rod; segmental plate; and trigeminal placode. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human FGF13 (fibroblast growth factor 13).

Ensembl:

ensembl_id ENSDART00000179853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006056 lncRNA downstream 269191 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006055 lncRNA downstream 269249 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006054 lncRNA downstream 573765 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA downstream 573765 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00005171 lncRNA downstream 1017003 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006057 lncRNA upstream 92670 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005206 lncRNA upstream 148401 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006058 lncRNA upstream 157106 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00006059 lncRNA upstream 247643 26991809 ~ 26999496 (-) False XLOC_002812
TCONS_00005211 lncRNA upstream 256396 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00005197 mRNA downstream 203369 26504792 ~ 26512993 (-) False XLOC_002803
TCONS_00005196 mRNA downstream 203369 26504792 ~ 26512993 (-) True XLOC_002803
TCONS_00005195 mRNA downstream 203620 26502334 ~ 26512742 (-) False XLOC_002803
TCONS_00005194 mRNA downstream 442268 26269532 ~ 26274094 (-) True XLOC_002801
TCONS_00005193 mRNA downstream 442733 26269072 ~ 26273629 (-) False XLOC_002801
TCONS_00005204 mRNA upstream 18627 26762793 ~ 26766780 (-) True XLOC_002805
TCONS_00005205 mRNA upstream 26881 26771047 ~ 26793448 (-) True XLOC_002806
TCONS_00005207 mRNA upstream 238088 26982254 ~ 26985231 (-) True XLOC_002810
TCONS_00005208 mRNA upstream 242942 26987108 ~ 26989875 (-) True XLOC_002811
TCONS_00005209 mRNA upstream 247639 26991805 ~ 26997344 (-) False XLOC_002812
TCONS_00005187 other downstream 513839 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 575281 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 1216888 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 2260630 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 2332981 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005214 other upstream 262105 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 425790 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 670080 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1454728 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 1548677 28292843 ~ 28292959 (-) True XLOC_002825

Expression Profile

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