RNA id: TU2348521


Basic Information

Item Value
RNA id TU2348521
length 1496
lncRNA type read_through
GC content 0.36
exon number 4
gene id G2053382
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12874467 ~ 12924756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagttccacatatttaataCAAAGAGAaacttaaacaaaacaaaatatatcaaTAAACGAACAACTAAaagtgactacgtggtgcacatgcacaaacacaaaacaatatcccacaaacacaggtgggaaaaatagctacttaaatatgatccccaattagagacaatgattaccagctgcctctaattgggaatcatacaaaacaccaacatagaagatataaactagaacacaacatagaaattataaactagaattccccctagtcacgccctgacctactacaccatagagaaacaagggctctacatggtcagggcgtgacaatgccAGTGGTATTCAacctgttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgctcatgtttcttggcccaagaaagtctcttcttattattggtgtcctttagtggtggtttctttgcagcaatttgaccatgaaggcctgattcacgcattcTCCTCTGTGAAGCATTTGGAATGCAATTTCttaggctggtaactccaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcatgtggtGATCCTCATTAGAGACAGTTTTATTATCAGCAAACTTTTATTGATGATACTTTTCCAACTCGCAGGATTAAATCAAATTAACTCCTCCTAAAAAAGATCCACACACGCTACGAAGCAATCCAGCACACATTCAGATAATGTTTTGTCTGAGATAACTTCACTGAATCCAGACCAAGGAAAATGTGTGAACAGTCTGTAAACATTAGAACACTCCATGATGCTAAAGTCGTCTTATACTGGGACTCTCTGGTTAGCTATACGCTACCAGGGCGTAGTTAGGAAACTTAAATACTGTGTACAGCATTATAAGTGTTTCCCTAAATTACTAAAACTGTCTATTAAAATATAAATCTATAACTTATATACTGGAGTAAATTTCAAGCACGCTATAAAAACGTTCAATAAACACTATGAAAACGTTAGAAAAACACTAGAAAAACGTTAGGAAAAACACAAAACGTTAGAGAAATGTTAGAAAACCACAAACGTAAAAACTAGAATAACGTTAGAAAAACACTAGAAAAAACGTTAGGGAAACACCAGGAAAAACACCAGTTAAAACAATAGGAAAACACCAGGAAAAACACCAGGAAAAACCATAGGAGAAACACTAGAAAAACATTAGGAAAACACCAGGAAAAACCATAGGAAAAACACTAGAAAAACAATAGGAAAACACCAGGAAAAAACCATAGGAAAAACACTAGAAAAACATTAGGAAATCACCAGGAAAAACCATAGAAAAACACTAGAAAAATGTTAGGAAAACACCAGGAAAAACCATAGgaaaaacaacaggaaaacacTAGAAGAATGTTAGAAAAAAAACCAGAAGAACACCACCTTAGAGGACCTGACCCATGGGGAGAAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2348303 lncRNA upstream 78725 12782380 ~ 12795742 (+) True G2053205
TU2348358 lncRNA upstream 102830 12771433 ~ 12771637 (+) True G2053249
TU2348350 lncRNA upstream 119681 12754484 ~ 12754786 (+) True G2053243
TU2348347 lncRNA upstream 126165 12748034 ~ 12748302 (+) True G2053240
TU2348346 lncRNA upstream 126648 12747146 ~ 12747819 (+) True G2053239
TU2348526 lncRNA downstream 24645 12949401 ~ 12952410 (+) True G2053387
TU2348527 lncRNA downstream 29098 12953854 ~ 12954147 (+) True G2053388
TU2348529 lncRNA downstream 31982 12956738 ~ 12957782 (+) True G2053390
TU2348580 lncRNA downstream 44326 12969082 ~ 12969315 (+) True G2053439
TU2348587 lncRNA downstream 59149 12983905 ~ 12984262 (+) True G2053446
XM_021587648.2 mRNA upstream 19166 12817186 ~ 12855301 (+) True LOC110507577
XM_021587642.2 mRNA upstream 60430 12802441 ~ 12814037 (+) True nop53
trnaa-ugc-186 mRNA upstream 78797 12795595 ~ 12795670 (+) True trnaa-ugc-186
XR_005040044.1 mRNA upstream 83352 12782256 ~ 12791115 (+) True LOC118944739
XM_021587640.2 mRNA upstream 122039 12749517 ~ 12752428 (+) True LOC110507572
XR_005039983.1 mRNA downstream 62817 12987573 ~ 12988538 (+) False LOC110507586
XR_005039982.1 mRNA downstream 140535 13065291 ~ 13075518 (+) True LOC118944675
XM_021587674.2 mRNA downstream 273099 13197855 ~ 13216273 (+) False LOC110507591
XM_021587673.2 mRNA downstream 273104 13197860 ~ 13216273 (+) True LOC110507591
XM_021587677.2 mRNA downstream 291723 13216479 ~ 13222270 (+) False LOC110507592
TU2347079 other upstream 434989 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 736668 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 1880879 10992985 ~ 10993588 (+) True G2051034
TU2345197 other upstream 2096100 10775087 ~ 10778367 (+) False LOC110507540
TU2348584 other downstream 53771 12978527 ~ 12978923 (+) True G2053443
TU2348868 other downstream 629984 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 1900764 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 2672277 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 3144814 16069570 ~ 16077339 (+) True LOC110507626

Expression Profile