RNA id: TU2348720


Basic Information

Item Value
RNA id TU2348720
length 361
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2053564
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13231506 ~ 13231866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGGAGTGTCCTATAGCCATTTCCCTACAGCAAGGCTCCTAGGCAGCATGACAGTGTTGCCATTGTCTATACAGGTTATTTGTAATGTCGAAATAAACATATATCTGATAAGGGAATTATATGCTTTAAAGgtaatgattagaatattccaccctgaaaccgtataattgtatgaaatgtattagaatcataaaactataatctgatgatgtgtgtagttttagtcagaatgaGAACAAGGACCTTTTGTTCCTTTTTAGTATGTAAGCAGGGTGCAAGTGGGAAACAAATGATAAGAGGAGCTATCAACAGACAAGCTGGactactgtgttccttacaggacattctgtctccACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2348719 lncRNA upstream 1175 13230096 ~ 13230331 (+) True G2053563
TU2348666 lncRNA upstream 9236 13220262 ~ 13222270 (+) False LOC110507592
TU2348667 lncRNA upstream 9236 13220262 ~ 13222270 (+) True LOC110507592
TU2348693 lncRNA upstream 45411 13183317 ~ 13186095 (+) True G2053540
TU2348662 lncRNA upstream 96159 13126295 ~ 13135347 (+) True G2053513
TU2348721 lncRNA downstream 115 13231981 ~ 13232330 (+) True G2053565
TU2348739 lncRNA downstream 44124 13275990 ~ 13278488 (+) True G2053583
TU2348786 lncRNA downstream 91369 13323235 ~ 13323660 (+) True G2053622
TU2348803 lncRNA downstream 113767 13345633 ~ 13345860 (+) True G2053639
TU2348815 lncRNA downstream 128220 13360086 ~ 13361770 (+) False G2053650
XM_021587677.2 mRNA upstream 9236 13216479 ~ 13222270 (+) False LOC110507592
XM_021587674.2 mRNA upstream 15233 13197855 ~ 13216273 (+) False LOC110507591
XM_021587673.2 mRNA upstream 15233 13197860 ~ 13216273 (+) True LOC110507591
XR_005039982.1 mRNA upstream 155988 13065291 ~ 13075518 (+) True LOC118944675
XR_005039983.1 mRNA upstream 242968 12987573 ~ 12988538 (+) False LOC110507586
XM_036964854.1 mRNA downstream 1665 13233531 ~ 13264437 (+) True LOC110507593
XM_036965267.1 mRNA downstream 120863 13352729 ~ 13365310 (+) False LOC118944728
XM_036964895.1 mRNA downstream 154183 13386049 ~ 13404009 (+) False LOC110507076
XM_021587693.2 mRNA downstream 186364 13418230 ~ 13425382 (+) True LOC110507600
XM_036965383.1 mRNA downstream 199607 13431473 ~ 13439015 (+) False LOC110507601
TU2348584 other upstream 252583 12978527 ~ 12978923 (+) True G2053443
TU2347079 other upstream 792028 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 1093707 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 2237918 10992985 ~ 10993588 (+) True G2051034
TU2345199 other upstream 2455638 10775087 ~ 10775868 (+) True LOC110507540
TU2348868 other downstream 322874 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 1593654 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 2365167 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 2837704 16069570 ~ 16077339 (+) True LOC110507626
TU2352309 other downstream 3142400 16374266 ~ 16376043 (+) True G2056820

Expression Profile