RNA id: TCONS_00055090


Basic Information

Item Value
RNA id TCONS_00055090
length 252
RNA type mRNA
GC content 0.57
exon number 3
gene id XLOC_028356
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 48519 ~ 53370 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaggaCGCTCCACAGACTGTCGTTGATGAGTTCTCCCAGTCTGAATGATTCGGGTCGGTCCGAGAGATCAGCGCTGGACGACAGGAACAACCAGCAGCAGCAGAGAGCGGGAACCAACGCCACCTggaacagcatccACAATGCGGTGATCTCGGTGTTCCAGCGCAGGGATCTGGCACAGAATGAGCTGTATGTGCTGAATGAAGGCgggcgagtgtgtgtgtgcgacgTCACTCCGTCTGCCAGATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057303 lncRNA downstream 36179 6163 ~ 12340 (-) True XLOC_028354
TCONS_00057971 lncRNA upstream 2655 56025 ~ 57100 (-) False XLOC_028357
TCONS_00057972 lncRNA upstream 18093 71463 ~ 72658 (-) True XLOC_028358
TCONS_00057973 lncRNA upstream 20060 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057974 lncRNA upstream 46621 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057304 lncRNA upstream 62952 116322 ~ 119194 (-) True XLOC_028362
TCONS_00055089 mRNA downstream 30308 17308 ~ 18211 (-) True XLOC_028355
TCONS_00055092 mRNA upstream 3664 57034 ~ 64703 (-) True XLOC_028357
TCONS_00055093 mRNA upstream 53917 107287 ~ 119689 (-) True XLOC_028361
TCONS_00055094 mRNA upstream 75327 128697 ~ 133492 (-) True XLOC_028363
TCONS_00055095 mRNA upstream 81042 134412 ~ 149334 (-) False XLOC_028364
TCONS_00055096 mRNA upstream 98136 151506 ~ 178510 (-) False XLOC_028365
TCONS_00055111 other upstream 629682 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 750777 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 883859 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 2007154 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2621736 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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