RNA id: TU2351549


Basic Information

Item Value
RNA id TU2351549
length 988
lncRNA type antisense_over
GC content 0.32
exon number 1
gene id G2056114
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15371348 ~ 15372335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATCTAATGAGAAGATTGAACAATGTGTGTAGTTTGCCCATATTTTTATTCTCTGTGTTTAACCAGCAGACTGCAGTGGAAGGAGAAGCAGGCCTGATGTAGGCCAAACATAGCTAAAGTCGGTCATTAACTTTCCAAACGGGTAAAAACAAGACACTCAATGCTTACAGCATATAGTAAAATGTGATGTattttaccattttattgtagACATAAATCTCAAAGACAGCAGCATCTGAAAATGTTATAATTTCATGTCCAAGGTAAAAactttacaaaaataaatacctttaaaaaagatagctacaataataataataatatagtatTATGGTCCTTCACTGAAGGTATATCATATTGCCTTTTTTGTTTTATGACATACAAAACTGGAATGAGAAATCAAACATATACATAGATATCTGACAAACAATAGAGCATTCTTCGCATTATgaataataacattttaaaacacaACTATGACATTATTACAAAGGAGTTGTTCTTTATGCAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2351403 lncRNA downstream 192428 15178693 ~ 15178920 (-) True G2055985
TU2351402 lncRNA downstream 193609 15177513 ~ 15177739 (-) True G2055984
TU2351326 lncRNA downstream 247123 15090869 ~ 15124225 (-) True LOC110507083
TU2351276 lncRNA downstream 409464 14960793 ~ 14961884 (-) True LOC110507187
TU2351274 lncRNA downstream 409577 14960793 ~ 14961771 (-) False LOC110507187
TU2351572 lncRNA upstream 32281 15404616 ~ 15404933 (-) True G2056135
TU2351578 lncRNA upstream 37202 15409537 ~ 15409778 (-) True G2056141
TU2351586 lncRNA upstream 55562 15427897 ~ 15428308 (-) True G2056149
TU2351810 lncRNA upstream 132278 15504613 ~ 15504963 (-) True LOC110507175
TU2351813 lncRNA upstream 134944 15507279 ~ 15507607 (-) True G2056359
XM_021587036.2 mRNA downstream 12973 15326868 ~ 15358375 (-) True LOC110507161
XM_021587058.2 mRNA downstream 168574 15198498 ~ 15202774 (-) True LOC110507168
XM_021587076.2 mRNA downstream 175512 15187693 ~ 15195836 (-) True LOC110507178
XM_021587046.2 mRNA downstream 196229 15169327 ~ 15175119 (-) True LOC110507165
XR_005040090.1 mRNA downstream 210279 15097208 ~ 15161069 (-) False LOC110507083
XR_005040092.1 mRNA upstream 110242 15482577 ~ 15486845 (-) True LOC118944779
LOC110507175 mRNA upstream 130377 15502712 ~ 15522529 (-) False LOC110507175
XM_021587059.2 mRNA upstream 181335 15553670 ~ 15558545 (-) True LOC110507169
XM_036965759.1 mRNA upstream 231834 15604169 ~ 15656857 (-) False LOC110507155
XM_036965758.1 mRNA upstream 231834 15604169 ~ 15674491 (-) False LOC110507155
TU2351045 other downstream 836108 14532987 ~ 14535240 (-) True LOC110507082
TU2349697 other downstream 1613651 13756175 ~ 13757697 (-) True LOC110507619
TU2349554 other downstream 1843913 13490771 ~ 13527435 (-) True LOC110507606
TU2349534 other downstream 1899396 13468224 ~ 13471952 (-) False G2054301
TU2351551 other upstream 3880 15376215 ~ 15376515 (-) True G2056115
TU2353838 other upstream 1623225 16995560 ~ 16999785 (-) True LOC110507646
TU2354252 other upstream 2092186 17464521 ~ 17469821 (-) True LOC110507661
TU2354506 other upstream 2550007 17922342 ~ 17922752 (-) True G2058724
TU2358439 other upstream 5541779 20914114 ~ 20922375 (-) True LOC110507754

Expression Profile