RNA id: TU2352868



Basic Information


Item Value
RNA id TU2352868
length 467
lncRNA type read_through
GC content 0.55
exon number 2
gene id G2057302
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16671078 ~ 16677588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggttagtgttagggtatAGTACCTGTCTATGCGGTGGGTACAGGAGTCGGTGGCATGGCTGCTGGGGCTTCTGGCTTGGCCCCCTTCTGCTCAGACACAGGGGTGGCGGGGATAGTCTCGTCTTTGGGCTCCACAATGCTCACATGGTCTGGCAGAGGCTTCTTGGGGCCGATCTTACCACTGGGGTCCCATGGTAACATGATTTTCACCTTGATGCCCAGCCACCCTGTCGGAGCAGGACGTGGCGTACAGCAGTGTCTACGTAGTAGTTGACTGGGTCTCCACTGTGGATCATCAGGCCGTCAACAAATTTCATTGACTTGGCCCTCTGACCCCTCAGCTTCCCAGAAACTACCACTTCACAACCCTTAGAGCCACTCTCCATGATGAACCTCAGCACACCATAGCAAGCCCTGgaagagggatagaaggaggaaagggatggaaagagggatgGTGAAGGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2352726 lncRNA upstream 203608 16442577 ~ 16468248 (+) True G2057174
TU2352667 lncRNA upstream 277510 16391021 ~ 16394346 (+) False LOC110507087
TU2352663 lncRNA upstream 280924 16390566 ~ 16390932 (+) True LOC110507086
TU2352289 lncRNA upstream 349992 16321206 ~ 16321864 (+) True G2056801
TU2352277 lncRNA upstream 367819 16303455 ~ 16304037 (+) True G2056789
TU2352869 lncRNA downstream 533 16673322 ~ 16674507 (+) True G2057302
TU2352871 lncRNA downstream 16795 16689584 ~ 16690727 (+) True G2057304
TU2352882 lncRNA downstream 40942 16713731 ~ 16714184 (+) True G2057315
TU2353000 lncRNA downstream 223610 16896399 ~ 16900472 (+) True G2057416
TU2353062 lncRNA downstream 322771 16995560 ~ 16999787 (+) False G2057476
XM_021586971.2 mRNA upstream 13154 16657763 ~ 16658702 (+) True LOC110507103
XM_036964635.1 mRNA upstream 18380 16652538 ~ 16653476 (+) True LOC110507098
XM_036964634.1 mRNA upstream 44504 16622542 ~ 16627352 (+) True LOC110507100
LOC110507099 mRNA upstream 60699 16610416 ~ 16611157 (+) True LOC110507099
XM_036964633.1 mRNA upstream 64761 16598218 ~ 16607095 (+) True LOC118944640
XM_036965679.1 mRNA downstream 4927 16677716 ~ 16688420 (+) True LOC110507104
XM_021587758.2 mRNA downstream 33019 16705808 ~ 16721477 (+) False LOC110507643
XM_021587756.2 mRNA downstream 38178 16710967 ~ 16721477 (+) False LOC110507643
XM_021587760.2 mRNA downstream 38178 16710967 ~ 16721477 (+) False LOC110507643
XM_021587761.2 mRNA downstream 38178 16710967 ~ 16721477 (+) False LOC110507643
TU2352672 other upstream 261487 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 295813 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 594517 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1074205 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 1838268 14825520 ~ 14833588 (+) True LOC110507180
TU2353191 other downstream 540321 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 540321 17213110 ~ 17216518 (+) False G2057561
TU2353439 other downstream 882715 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 882715 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 882715 17555504 ~ 17566384 (+) True G2057788

Expression Profile