RNA id: TU2353065


Basic Information

Item Value
RNA id TU2353065
length 2953
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G2057476
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16995560 ~ 17001137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATACCCTGTTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTATTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTGTTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTGTTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTGGTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTGTTAGACTGCCCTGTCTGTCGGTGTCTCCTATACCCTGTTAGACTGCCCTGTCTGTCGGTGTCTCCTGACAGACTGAATGAGACAGGCTATGACTAGTTATGGTCCCAAACTACACTGGATCAACGACAGGCACAGCGTTCAAGTATGTCTGGGTCTGTTCAACAGTCCAAACCATAGTTTCAGAGGCAGCCAGAGAACAGAACACTGTGCATTCAGCCTATACAGTGTTAGGACACATGACACATACAAACAAAGCACTTTGGATGGAGACACCAGGTAGCAGGGAACAGGAAACTGTGGCAAGCAGCATTGATTTCACAGATTGATATGTGTAGCAGGCTTTGTGCATGTACCGTTAAAGTTATTCCTTTCCTAAGCTAACCTATCAGTAACCTAATTCAGTCAGCCCAGTACATACCTTATAGCCCGCTCCCAGCTGATGAATGGCAAATATCTGAGCTGGGTTGAGAGCCTCAGAGAACACATAGATGGCCCCCAGCTGACCACAGAATACCCTGTTAGCATCAGCTGTCTCCGACGAACCCAGGAAGCACTTATCATAACtctgtagagggagaggagagggtcagtacaTGGGCACACAGAGCAGGGGTTTATCATAGGTCTGTAGtgggatagggaggagagagagagagagaggagacagagagaggggagaggagacgatCAGATTTGtatagggacacagagagaggggagacagagagagagagagaggagacagagagaggggagaggagaggatcagatttgtatagggacacagagagaggggagacagagagagagagagagaggagacagagagaggggagaggagaggatcagatttgtatagggacacagagagaggaaaataggGTTCATCATAGCTCTGTAAAATGATACAAAGAAGAATATATTTATAATGTTCAAACATAAACCACAATCACCAAACTTTCTCTCTATATATGGCTCTGGAAAATGGTTAGGGCAATTatacagacactgagacagagatgagaggataGGGTCATGTCTTTTAAATCCTCCAGCAGACTCAGAGAGGTTACAACATCACCCAAACTTCAAAGACAGCTGAGCATCAGAGCAATTAACAGACAAAAAAACTGATGACAGCTTTTGAATGGGCAAATAGGATAATTATGAGAGTGCATGATTTACAGTGCCTCTAATAGATTGCCACTCAGAGAAAAAGAAAGGTTGGCAGACACTTAgatctgcattccaaatggcaccctattctgaatttagtgcactacctttgaccatatcccatagtgtgtgtgtgtctgcccttATAAACATGTACGTGTAGCCCTTGCCTTGTCGACATGTGTTATAAAAATATCCACTACACACACCCCATCAAGCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAACAACAGCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAACACCATCCttaactctgcagatagcaccATCCTAACTCTGTAGATAACACCATCCTTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAACACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATcctaactctgcagatagcaccATCCTTAACTCTGTAGATAACACCATCcctaactctgcagatagcaccATCCTTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAACACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATcctaactctgcagatagcaccATCCCTAACTCTGTAGATAGCACCATCCTTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTACAGATAGCACCATCCCTAACTCTACAGATAGCACCATCCCTAACTCTACAGATAGCACCATCCCTAACTCTGTAGATAGCACCATCCCTAACTCTACAGATAGCACCATCCCTAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2353000 lncRNA upstream 95088 16896399 ~ 16900472 (+) True G2057416
TU2352882 lncRNA upstream 281376 16713731 ~ 16714184 (+) True G2057315
TU2352871 lncRNA upstream 304833 16689584 ~ 16690727 (+) True G2057304
TU2352869 lncRNA upstream 321053 16673322 ~ 16674507 (+) True G2057302
TU2352868 lncRNA upstream 322771 16671856 ~ 16672789 (+) False G2057302
TU2353109 lncRNA downstream 44186 17043973 ~ 17075854 (+) True G2057495
TU2353107 lncRNA downstream 70103 17069890 ~ 17072680 (+) True G2057494
TU2353149 lncRNA downstream 93473 17093260 ~ 17095885 (+) True G2057533
TU2353172 lncRNA downstream 130336 17130123 ~ 17130402 (+) True G2057553
TU2353173 lncRNA downstream 130737 17130524 ~ 17130985 (+) True G2057554
XM_021587772.2 mRNA upstream 126746 16866461 ~ 16868814 (+) True LOC110507649
XM_036965412.1 mRNA upstream 247880 16726245 ~ 16747680 (+) False LOC110507645
XM_036965411.1 mRNA upstream 247880 16726246 ~ 16747680 (+) True LOC110507645
XM_021587757.2 mRNA upstream 274083 16710970 ~ 16721477 (+) False LOC110507643
trnag-ucc-232 mRNA downstream 207049 17206836 ~ 17206907 (+) True trnag-ucc-232
XM_021587783.2 mRNA downstream 219701 17219488 ~ 17227085 (+) False LOC110507653
XM_021587784.2 mRNA downstream 219769 17219556 ~ 17227085 (+) True LOC110507653
XM_036965241.1 mRNA downstream 247519 17247306 ~ 17260399 (+) False LOC110507657
XM_036965242.1 mRNA downstream 247672 17247459 ~ 17260399 (+) True LOC110507657
TU2352672 other upstream 585191 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 619517 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 918221 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1397909 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 2161972 14825520 ~ 14833588 (+) True LOC110507180
TU2353191 other downstream 213323 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 213323 17213110 ~ 17216518 (+) False G2057561
TU2353439 other downstream 555717 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 555717 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 555717 17555504 ~ 17566384 (+) True G2057788

Expression Profile