RNA id: TU2353193



Basic Information


Item Value
RNA id TU2353193
length 783
RNA type TUCP
GC content 0.45
exon number 2
gene id G2057561
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 17213110 ~ 17219017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGCAACAAGGGAGAGTTTGTTGTTTTGAAAAGTTTGTGACAAAGTTTGCTGTTTTGGAAAGTTTTGAAAGTCTGGTTAATAGAAAGCTACCTTTTGAGTTTGGATCCGGCGATGCAGTTGGCATCAGTTGATGGAACCGCTACTATCTGTCCAGTGATCCTGCCGACCAAGGCCGGGTATGAGGAGTTGCTTGGtgtagctgctagctagctagatgccTATCAAGTGTGGTGGAATATTCTATTCAAGAAAGAGAgactttgtcatttcttcaaacaatcatctttattcaatatcgactaattattgcaataatgaaaccaTCGACCTAACAGTCTTGACATTTGGGCCGAGAGCCTTACTGATAATGATAAAACAGAGACCTTATATAGGACTTAAAAATGCTAAGTCAGACTGGTTTCAACTCCCATAAGCCACCTTGGTTGTCTACACAGGATGGTGATTCACTCCCAACCcggcttagtttcccagatgccagTGAGCCAGCCAGGAAGCTGTCAATGTCCATTCCCCATGTCAGTCTCCCAGATCACCCCGTCTTTGTGTCTAAGTGGTATGGATGCAGTCTTCAAGCCCACCAGTCTCTCCAGGAGGAACATAACTCTGATAGTCAGCACCACAGCAGAGCACCCTGGCTTCTGTACAGGGGGGAGGGTAATCACTGCACCAGGCCCATGAGTAGGTCCAGAAATACAGACCTCACATCCGACCCAACGATTGCATTTGACAAGATGAAGTGAACAACCACTTTGTATAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2353205 lncRNA upstream 66684 17146091 ~ 17146426 (+) True G2057572
TU2353173 lncRNA upstream 82125 17130524 ~ 17130985 (+) True G2057554
TU2353172 lncRNA upstream 82708 17130123 ~ 17130402 (+) True G2057553
TU2353149 lncRNA upstream 117225 17093260 ~ 17095885 (+) True G2057533
TU2353107 lncRNA upstream 140430 17069890 ~ 17072680 (+) True G2057494
TU2353275 lncRNA downstream 64707 17281225 ~ 17281967 (+) True G2057638
TU2353297 lncRNA downstream 84881 17301399 ~ 17301807 (+) True G2057657
TU2353291 lncRNA downstream 101385 17317903 ~ 17321116 (+) True LOC110507110
TU2353280 lncRNA downstream 161261 17377779 ~ 17379119 (+) True LOC110507111
TU2353279 lncRNA downstream 163089 17379607 ~ 17380461 (+) True G2057641
trnag-ucc-232 mRNA upstream 6203 17206836 ~ 17206907 (+) True trnag-ucc-232
XM_021587772.2 mRNA upstream 344296 16866461 ~ 16868814 (+) True LOC110507649
XM_036965412.1 mRNA upstream 465430 16726245 ~ 16747680 (+) False LOC110507645
XM_036965411.1 mRNA upstream 465430 16726246 ~ 16747680 (+) True LOC110507645
XM_021587762.2 mRNA upstream 493604 16711743 ~ 16719506 (+) True LOC110507643
XM_021587783.2 mRNA downstream 2970 17219488 ~ 17227085 (+) False LOC110507653
XM_021587784.2 mRNA downstream 3038 17219556 ~ 17227085 (+) True LOC110507653
XM_036965241.1 mRNA downstream 30788 17247306 ~ 17260399 (+) False LOC110507657
XM_036965242.1 mRNA downstream 30941 17247459 ~ 17260399 (+) True LOC110507657
XM_036964605.1 mRNA downstream 49671 17266189 ~ 17287155 (+) False dcnl4
TU2352672 other upstream 802741 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 837067 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 1135771 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1615459 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 2379522 14825520 ~ 14833588 (+) True LOC110507180
TU2353439 other downstream 338986 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 338986 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 338986 17555504 ~ 17566384 (+) True G2057788
TU2353474 other downstream 367452 17583970 ~ 17585924 (+) True G2057804
TU2353626 other downstream 657283 17873801 ~ 17875832 (+) True G2057945

Expression Profile