RNA id: TCONS_00055096


Basic Information

Item Value
RNA id TCONS_00055096
length 3170
RNA type mRNA
GC content 0.57
exon number 21
gene id XLOC_028365
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 151506 ~ 178510 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGGTGCGCGCGCTCGTGTCTGTGAGGCGGAGCGCGGTCAAACTCACACAGACGGAGGATCATTTGCTCATTTAACGGAGAAACTCCGTGACAGTCGCCGTCAGCGGAcgagctgtgtgtgtttgtgcttctgTCATGCGGTAAAAGCGGAGACCGCACAAACAGgagCGGATCTGTGTGTGTGGGGCAGAGTCCAGACATGAACGGATACACACCGCCAGCCTCACAGATGAAcggACACGGCTCGCTGTCTCCAGATGTTCCCGGCAAAAAGTCGAGTGGTAAAGCTCTGTACGAGCAAAGGAAAAACTACACCAAAAACAGCATCAACAGCCTGACGGACACGTCTCAGTATCATGTGGAGcatCTGACCACGTTTGTGATGGACCGTAAGGAGGCGATGCTGACCATCGAGGACGGCATCAGGAAACTGCGGCTGCTGGACGCTAAAGGGAAGATCTGGACTCAGGACATGCTGCTGCAGGTGGACAACAGAGCAGTCAGCCTCATAGACCACGACAGCAAGaatgAGCTGGAGAACTTTCCTCTGGGCTCCATCCAGCACTGTCAGCCCGTCACCAACGCCTGCAGCTACGACTCCATCTTGGCTCTAGTGTGTAAGGAGTCCGGGCAGGGGAAACCAGACCTGCACCTGTTCCAGTGCGAGGACATCaagGCCAGTCTAATCCACATGGACATCGAGAGCGCCATCAGCGACCACAAGGGCGGGAAAATCAAGAAGAGGCCGGAGGTGCTGAAgaTGATCCTGAAGAGTGACGGAAGCATCCCTCCGCCTCCAGGAGGCCCCGCCCCTCAGGCGCcagcagctgtcaatcaagtggacACCAAGAGCCGAGTGGCCAGCTGGTCAGCCTGGACCAATGAGCAGCAGGACAacGACCCACAGAGACActacacagagctggacacgcctccTGAGATGAGCGCAGCACAGGTGGACAGAGATGTGCAAATCCTCAATCACATTCTGGACGACATCGAACACTTCGTCACCAAACTGCAGAAAGCTGCCGAGGCCTTTAACGAGCTCTCCAAACGCAAGAAGAGTAAGAAGAGCAAGAAGAAGGGCCCTGGAGAGGGAGTTCTGACACTGAGAGCCAAACCGCCGACTCAGGACGAGTTCATCGACTGCTTCCAGAAGTTCAAACACGCCTTCAACCTGCTGGGGAAGTTGAAGAACCACATTCAGAATCCCAGCGCTGTAGATCTGGTTCACTTCCTGTTCAATCCACTCAAGCTGGTGATCCAGACGTCTGGAGGAGTTGATCTGGCTAAAAGTGTAGTCGTTCCTCTCCTCACCAGAGAAGCCATCGAGTTCCTGCACACAGCGGGATCTGCGGAGGAGAGACACCTATGGGTGACACTAGGAGATGCATGGACCAAGTGCAAGCTGGAGTGGCCGAAGGATTATCCGTTTCCTTCGCACACGTTGAGTTTTCGGGATGGCTGGGAGCCGCCGGTGCTGGTGTCGCGGGAGCAGGACGTCACTCAGCTAGCGGAGAGACTGAACGCTGCGCAGAGCGAGACTCCGAGGCCGCCAATCACTCAGCAGACAGTGCAGGATTTCAGCAGTGCAGACGGGAATCTGGACGCTCACAGCAGGACGGCGCAGAGAAACTTTGCCAAATCCAAGTATGACTTTGTGGCCAGAAACAACACGGAGCTGTCTGTGCTGAAGGACGAGGTGGTGGAGGTGCTGGACGACAGGAAGCAGTGGTGGAAGGTGCGCAACGGAGCGGGAGCGTCAGGATACGTGCCAAACAACATCCTGGAGATCAGCAGAGCGGTGGACATGACGGGCCGCGGAGAGCCCATATACAGCCACACTAtacagAAGCAGCGGACAGATTATGTGCCCAGGCCGACAGTGACTGAAGCTCCGCCCACGCCGACCCCCCCTCCCCCGCCAGCCCCACTGCTACCCACTGCCAGCCCAGCCAATCAGAGTGCAGCAGCCATCATCCCAGCTAATCAGAGCACAGGGGCCACCAGCCCGGCCAATCAAAGAGCAGTGGCCACAAGCCCGGCCAATCAGAGCACAGCAGCTGCTGATCAGGCCAACCAAAGTGAGAGCAACAGCGGAGAGCAGCACGACGACACTGTGAGCGAGAGCGACAGCGTGAACATGAGAGAGCAGCAGAGGGAGAGAGCAGCGCCGGCCAaccGGCGTAAGTCTAACATGGAGGAGGTCCAGGATGAGCTGATGTACAGGCTGACTCTGGGTCGCAGCGCGCAGAAGCGGATCCAGACCCCGAGCCGGAGCAGTCAGCCGGCGCTCAGCATCAGCTACGACTCCACACCGCAGCAGGTCAAGGACTGGCTGATGCTCAAAGGCTTCAGCGCCGCGACCGTGAGCAGTCTCGGGGTGCTGACCGGCGCTCAGCTCTTCTCTCTGAATAAAGACGAGCTGAAGACGGTGTGTCCAGATGACGGCGCTCGCGTCTTCAGCCAGATCAGCGTGCAGAAGGCCGCTCTGGAGAGGAGCTCCGGCTCTGAGCTGATGGAGGTCATGCGGCGGCGGCAGGAGAAGCTAGCGGCGACAGCTACGAGCGACTCAGGAGTGGAGTCCTTCGACGAGGCCAGCAGCCACTGACCCCTCTCTGACCTTTTACAGGACGCTGCCGAGCGCGCTCAGTTCGCCGCCATAATGCGCCGTCGTCAGGAACTCTTGGACCCGTCTGATAACGGCACCGGCTCAGACGCGGAGGAGCTCGCCTGAGGAGGACGCTCATGTTCTCGTAGTCTAGTGCCATCGAGTTCTGCCTTCATAGTCCAACGTCTGATTACCGTCCGATCAAACCTGCTGTACATACACCGACACCGCACCGCTCATCTGTCAGCTGCTTTGAGTGGAGGATTATGGGTAAGACTGCTCGATCTGCGGGTTTCACACTAGTAAATGATCACACTTCTGATTGTCTTGTACTCAGCCGTACTGCCAAAACACAAGCTTCATAGGAGGACCGACAGCGCTCAGTCTGGAGCTCCTCTGAGGATGAGGAAGAGTCCTGCTAATGTGATGATGAAGGCCAAATCATGCTCTGGGTGGAGGTTTCagtgggaacacacacacacacacacacacacacacacacacaccttcagtctgtatatataatgtgtgtgctGAATAAATGCAATCATCTG

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:1900029 positive regulation of ruffle assembly biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0035591 signaling adaptor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-871 Predicted to enable actin binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of ruffle assembly; and regulation of Rho protein signal transduction. Predicted to act upstream of or within actin filament bundle assembly and barbed-end actin filament capping. Predicted to be located in cytoplasm. Predicted to be active in ruffle membrane. Is expressed in nervous system; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 102. Orthologous to human EPS8 (epidermal growth factor receptor pathway substrate 8).

Ensembl:

ensembl_id ENSDART00000169805

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057305 lncRNA downstream 13749 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 32312 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 50129 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 76898 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 78848 71463 ~ 72658 (-) True XLOC_028358
TCONS_00055106 lncRNA upstream 151261 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 215041 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 504451 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 523102 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 545320 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055095 mRNA downstream 2172 134412 ~ 149334 (-) False XLOC_028364
TCONS_00055094 mRNA downstream 18014 128697 ~ 133492 (-) True XLOC_028363
TCONS_00055093 mRNA downstream 31817 107287 ~ 119689 (-) True XLOC_028361
TCONS_00055092 mRNA downstream 86803 57034 ~ 64703 (-) True XLOC_028357
TCONS_00055090 mRNA downstream 98136 48519 ~ 53370 (-) False XLOC_028356
TCONS_00055099 mRNA upstream 6353 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055098 mRNA upstream 6353 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055100 mRNA upstream 6353 184863 ~ 193762 (-) True XLOC_028366
TCONS_00055101 mRNA upstream 12037 190547 ~ 211714 (-) True XLOC_028367
TCONS_00055102 mRNA upstream 55302 233812 ~ 240737 (-) True XLOC_028368
TCONS_00055111 other upstream 504542 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 625637 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 758719 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1882014 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2496596 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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