RNA id: TU2353453


Basic Information

Item Value
RNA id TU2353453
length 5156
RNA type TUCP
GC content 0.41
exon number 5
gene id G2057788
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 17555504 ~ 17566384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtaacactttatactagggttcatacagcacagtacagggtgttagacacactggtaacactttatactagggtacatacagtacagcacagtacagggtgttagacatactggtaacactATATACTAGggttcatacagtacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacaacacagtacagggtgttagacatactggtaacactttatactagggtacatacaccacagtacagttacagggtgttagacatacaggtaacactttatactagggtacatacaacacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacacactggtaacactttatactagggtacatacagtacagcacagtacagggtgttagacatactggtaacactttatactagggttcatacagtacagtacagtacagggtgttagacatacaggtaacactttatactagggtacatacaacacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtagagggtgttagacatactggtaacactttatactggggttcatacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagttacagggtgttagacatactggtaacactttattctAGGGttcatacagcacagtacagtacagggtgttaaacatactggtaacactttatactagggtTCATACAGCACAGGGTGTTAaacatactggtaacactttatactagggtacatacaccacagtacagtataggatgttagacatactggtaacactttatactagggtacatacaacacagtacagtacagaatgttagacatactggtaacactttatactagggttcatacagtacagggtgttagacatactggtaacactttatactagggtacatacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttatactaggctacatacaccacagtacagttacagggtgttagacatactgtactggtaacactttatactagggtacatacaccacagtacagtacaggatgtTAGACATACTGTtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttacacTAGGGTACATACACCACAGTACAGttacagggtgttagacatactggtaacactttatagtAGGGTACATGCAACacagtacagggtgttagacatactggtaacactttatactggggttcatacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagttacagggtgttagacatactggtaacactttattctAGGGttcatacagcacagtacagtacagggtgttaaacatactggtaacactttatactagggtTCATACAGCACAGGGTGTTAaacatactggtaacactttatactagggtacatacaccacagtacagtataggatgttagacatactggtaacactttatagtAGGGTACATACAACacagggtgttagacatactggtaacactttatactaaggtacatacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttatactaggctacatacaccacagtacagttacagggtgttagacatactgtactggtaacactttatactaggctacatacaccacagtacagtacaggatgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttatactagggtacatacaccacagtacagttacagggtgttagacatactggtaacactttatagtAGGGTACatacaccacagtacagtacaggatgtTAGACATACTGTtaacactttatactagggttcatacagcacagtacagggtgttagacatactggtaacactttacacTAGGGTACATACACCACAGTACAGttacagggtgttagacatactggtaacactttatagtAGGGTACATGCAACacagtacagggtgttagacatactggtaacactttatactagggtacatacaccacagtacagttacagggtgttagacatactggtaacactttatactagggtacatacaacacagtacagggtgttagacatactggtaacactttatactagggttcatacagcacagtacagtacagggtgttagacatactggtaacactttatactagggttcatacaccacagtacagttacagggtgttagacatactggtaacactttatactagggtacatacaacacagtacagggtgttagacatactggtaacactttatactagggtacatacaccacagtacagttacagggtgttagacatactggtaacactttataatagggtacatacaacacagtacagggtgttagacatactggtaacactttatactaggCTACATACACCACAGTACAATAAAATgtgttagacatactggtaacactttatactagggtTCACACAGCACAGGGTGTTACCCTGGCAGTTACATACATTAGCATACATACAGCACAGGGTGTTAGACGTACTGAACCATTCAGcactgctaaatatgtgtattaaATCAATAAATGATTCACTGCACAGTGCGTCTCTCAACACATGACAATATAATCAGGGTATAATCAGTTTCTCCAACAGAGGAGATGGCAGTCTGAGACGTTTGTCAGTCTTACCACCAGGGTAGAGGAGGGTTTTGACAAAGTGAATGACTCCATTAGTGGCCATGATATCATGTTCAGGGACCTCAATAGTGTTCACTCTGATTGTGTTGTTagcctggaggagaggagtagagaggattAAGATCCAAACACTGATGAGGTTGGCATTGATGACATTATATACAGAACATTTGCAAcagttgtggtgttgtggtgtgatcataacatacaggaactcaagtccttttgttcacctgacctagaattccttacaatcaattGCCGGCCGCATTATcaaccaagagaattctcttcgattatgatgacagtcgtgtatatcccccccaagtagacacctcgacggccctgaaataacttaatttgactctatgtaaaccacatatcctgaggctgcatttattgtagctggagattttaacaaggctaatctgaaaacaatgctccctaaattatatcagcatatcgaatgtgcGACACGTGACGGCAAAATTCTgaatcattgttactctaacttctgcgatgcatacaaagccctctcTCGTCCTCCTTTTGgcaatctgaccatgactccattttgttgctcccagcctgcagacagaaactaaaacaggaaatgccttgctcaggtctgttcaacgctggtccgaccaatctgattccacgcttcaagactgcttcgatcacgtggactgggatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcatcaacaagtgcaacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagtttagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgtcaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcacagctgaggtgggagactctgtccatatgacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttaccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatttaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtgccagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgcgaaaaaatttcagtctctcgatgtgcaaaaccgatagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2353393 lncRNA upstream 3993 17550789 ~ 17551511 (+) True G2057743
TU2353435 lncRNA upstream 6657 17548605 ~ 17548847 (+) True G2057784
TU2353434 lncRNA upstream 7604 17547267 ~ 17547900 (+) True G2057783
TU2353422 lncRNA upstream 26902 17528309 ~ 17528602 (+) True G2057771
TU2353389 lncRNA upstream 71900 17481710 ~ 17483604 (+) True si:dkey-56d12.4
TU2353481 lncRNA downstream 39678 17606062 ~ 17609718 (+) True G2057810
TU2353485 lncRNA downstream 41103 17607487 ~ 17610380 (+) False G2057813
TU2353486 lncRNA downstream 41103 17607487 ~ 17610380 (+) True G2057813
TU2353498 lncRNA downstream 57891 17624275 ~ 17624569 (+) True G2057825
TU2353512 lncRNA downstream 83075 17649459 ~ 17649780 (+) True G2057839
XM_036965621.1 mRNA upstream 71375 17481701 ~ 17484129 (+) False si:dkey-56d12.4
XM_036965589.1 mRNA upstream 177171 17321743 ~ 17378333 (+) False LOC110507111
XM_036965196.1 mRNA upstream 234223 17293322 ~ 17321281 (+) False LOC110507110
XM_036965195.1 mRNA upstream 234223 17293324 ~ 17321281 (+) False LOC110507110
XM_036964610.1 mRNA upstream 268349 17270157 ~ 17287155 (+) True dcnl4
XM_036964988.1 mRNA downstream 104070 17670454 ~ 17780391 (+) True LOC110507114
XM_036965529.1 mRNA downstream 219891 17786275 ~ 17814495 (+) True LOC110507666
XM_036965141.1 mRNA downstream 634412 18200796 ~ 18243131 (+) False brip1
XM_036965139.1 mRNA downstream 634447 18200831 ~ 18243131 (+) False brip1
XM_036965143.1 mRNA downstream 634447 18200831 ~ 18243131 (+) False brip1
TU2353191 other upstream 338961 17213110 ~ 17216543 (+) False G2057561
TU2353193 other upstream 338986 17213110 ~ 17216518 (+) False G2057561
TU2352672 other upstream 1145135 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 1179461 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 1478165 16069570 ~ 16077339 (+) True LOC110507626
TU2353474 other downstream 17586 17583970 ~ 17585924 (+) True G2057804
TU2353626 other downstream 307417 17873801 ~ 17875832 (+) True G2057945
TU2355275 other downstream 1004715 18571099 ~ 18594842 (+) False G2059435
TU2355276 other downstream 1004715 18571099 ~ 18592997 (+) True G2059435
TU2355582 other downstream 1525563 19091947 ~ 19092272 (+) True G2059714

Expression Profile