RNA id: TU2353481


Basic Information

Item Value
RNA id TU2353481
length 464
lncRNA type intronic
GC content 0.39
exon number 2
gene id G2057810
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 17606062 ~ 17609718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATAATGCATGTGGTTGTGCATTGATGTTTCGTGCAAGAGTTGAAGGCTTGCTTGGGTATAATCTTAAATCTTGTTCCTTTGACGTTCATTACTAAACCCTCTGAACTCCTCTGCTTCAGACTAGTCTTTGTTTCCCAACATACACTGGATGAAGAGAGGGTATTTGATGGTCCATCATCCTCCTAGATTAATCTTGAGTGCTGTTCATTTTTATGTTAATTTAACCTATCCTTCTTAACTGCTCTCCCTCTCAAGTTCAAATTCAGGCATAGTTCCGTTAAAGGTCTCTTTGTTTCTCAACATCCTCCTACATCCTCTGATGTTGGTGACAAATTAAGTCAAAGATAACACAGACCTTTGTTATCTTCCCTAAAACTCCCTGcttcattccaaatggcaccctattccctatattgtgtacTACTTTTggttctggtcaaatgtagtgcactatataagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2353451 lncRNA upstream 45347 17555504 ~ 17560715 (+) False G2057788
TU2353441 lncRNA upstream 45905 17555504 ~ 17560157 (+) False G2057788
TU2353452 lncRNA upstream 47464 17555504 ~ 17558598 (+) False G2057788
TU2353393 lncRNA upstream 54551 17550789 ~ 17551511 (+) True G2057743
TU2353435 lncRNA upstream 57215 17548605 ~ 17548847 (+) True G2057784
TU2353498 lncRNA downstream 14557 17624275 ~ 17624569 (+) True G2057825
TU2353512 lncRNA downstream 39741 17649459 ~ 17649780 (+) True G2057839
TU2353527 lncRNA downstream 58977 17668695 ~ 17669077 (+) True G2057854
TU2353575 lncRNA downstream 154588 17764306 ~ 17764571 (+) True G2057902
TU2353623 lncRNA downstream 260650 17870368 ~ 17870614 (+) True G2057943
XM_036965621.1 mRNA upstream 121933 17481701 ~ 17484129 (+) False si:dkey-56d12.4
XM_036965589.1 mRNA upstream 227729 17321743 ~ 17378333 (+) False LOC110507111
XM_036965196.1 mRNA upstream 284781 17293322 ~ 17321281 (+) False LOC110507110
XM_036965195.1 mRNA upstream 284781 17293324 ~ 17321281 (+) False LOC110507110
XM_036964610.1 mRNA upstream 318907 17270157 ~ 17287155 (+) True dcnl4
XM_036964988.1 mRNA downstream 60736 17670454 ~ 17780391 (+) True LOC110507114
XM_036965529.1 mRNA downstream 176557 17786275 ~ 17814495 (+) True LOC110507666
XM_036965141.1 mRNA downstream 591078 18200796 ~ 18243131 (+) False brip1
XM_036965139.1 mRNA downstream 591113 18200831 ~ 18243131 (+) False brip1
XM_036965143.1 mRNA downstream 591113 18200831 ~ 18243131 (+) False brip1
TU2353474 other upstream 20138 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 39678 17555504 ~ 17566384 (+) False G2057788
TU2353443 other upstream 39678 17555504 ~ 17566384 (+) False G2057788
TU2353453 other upstream 39678 17555504 ~ 17566384 (+) True G2057788
TU2353191 other upstream 389519 17213110 ~ 17216543 (+) False G2057561
TU2353626 other downstream 264083 17873801 ~ 17875832 (+) True G2057945
TU2355275 other downstream 961381 18571099 ~ 18594842 (+) False G2059435
TU2355276 other downstream 961381 18571099 ~ 18592997 (+) True G2059435
TU2355582 other downstream 1482229 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 1583739 19193457 ~ 19195184 (+) True G2059777

Expression Profile