RNA id: TCONS_00055100


Basic Information

Item Value
RNA id TCONS_00055100
length 1137
RNA type mRNA
GC content 0.54
exon number 12
gene id XLOC_028366
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 184863 ~ 193762 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTGTCATTAGAGATTTTCCAAACACTCCTGATATTGTTGTTggagTGTGGTGCTGAAACTTTCGTCAACTTTGCCTCTTTTGAGCGAGACGGGAAACTGCCGTATAACTGGCGCAGGAGTCTCTTTGCGTTCCTCACGCTTCTGCCATCCTGCCTTTGGACTGACTATCTTTTGGCCTTTTATATTAATCCGTGGAGCAAAACGGCACTTAAGAAGAGGAAACTGACCAGtccgGTACAGCTCAGTGATTTCGAGGCCTACCTCAAAGACATGGGCAAAGACTCAGCCTACAAGTTCTCCCTGCAGTTCGAGGAGCTGAAGAGTGTAGGTCTGGATTTGTCCCATGAAGCCGCTGATCTGCCCATCAACAGACCCAAGAACCGCTACACCAACATCCTGCCCTatGACTTCAGTCGAGTGAAGCTGATCTCTCTGCACAATGATGAAGGCTCTGATTACATCAATGCTAACTATATTCCCggctaTAACTCTCCACGCGAGTACATCGCCACGCAGGGCCCACTGCCCGACACCAGGAACGACTTCTGGAAGATGGTGCTGCAGCAGAAAGTGCACATCATCGTGATGCTAACACAGTGCAACGAGCGCCGCAGGGTGAAGTGTGACCACTACTGGCCGTTCAGTGATGAGCCGGTGGCGTATGGAGAGATCAGTGTGGAGATGCTGGCGGAGACAGACTCGCCCGAGTGGACCATCAGGAGCTTCAGACTCGCATACgctgaTGAGACTCAGGACGTCCTGCACTTTAACTACACCTCGTGGCCGGATCACGGAGTGCCGACGGTGAACGCCATCGAGAGCATCCTACAGTTCGTGCAGATCGTCCGGCAGCAGGTCAACAGGAGCAAAGGACCCATCGTAGTgcactgcagtgctGGCGTGGGCCGCACCGGCACCTTCATCTCTCTGGACCGGCTGATGCAGCACATTCAGGAGCACGAGTATGTGGACGTGCTGGGGCTGGTGTCCGACATGCGCTCGCACCGACTGTCCATGGTGCAGACTGAGgagcAGTACGTGTTCATCCATCAGTGTGTTCTGCTGAtgtggaagaagaagaagcagcagTCACACACCAGTGACGTCATCTACGAGAACGTCAGCAAGTCCTAa

Function

GO:

id name namespace
GO:0021587 cerebellum morphogenesis biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0007417 central nervous system development biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-070424-54 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within cerebellum morphogenesis and regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; optic cup; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in nephrotic syndrome type 6. Orthologous to human PTPRO (protein tyrosine phosphatase receptor type O).

Ensembl:

ensembl_id ENSDART00000169667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057305 lncRNA downstream 47106 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 65669 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 83486 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 110255 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 112205 71463 ~ 72658 (-) True XLOC_028358
TCONS_00055106 lncRNA upstream 136009 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 199789 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 489199 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 507850 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 530068 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055096 mRNA downstream 6353 151506 ~ 178510 (-) False XLOC_028365
TCONS_00055097 mRNA downstream 14743 152057 ~ 170120 (-) True XLOC_028365
TCONS_00055095 mRNA downstream 35529 134412 ~ 149334 (-) False XLOC_028364
TCONS_00055094 mRNA downstream 51371 128697 ~ 133492 (-) True XLOC_028363
TCONS_00055093 mRNA downstream 65174 107287 ~ 119689 (-) True XLOC_028361
TCONS_00055102 mRNA upstream 40050 233812 ~ 240737 (-) True XLOC_028368
TCONS_00055103 mRNA upstream 75681 269443 ~ 277081 (-) True XLOC_028369
TCONS_00055104 mRNA upstream 92663 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055105 mRNA upstream 131266 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055107 mRNA upstream 192673 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055111 other upstream 489290 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 610385 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 743467 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1866762 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2481344 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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