RNA id: TCONS_00055104


Basic Information

Item Value
RNA id TCONS_00055104
length 240
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_028370
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 286425 ~ 287425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTTTGCGGGGATTTTCAGAGCTGCTGAAGTGCAGAggagtgatgatgaaaatgaggaTGAAGATGAGCGGAGACTCTTCATCTCTGACCCTCACAGAGCAGCAGGGCGGAATCAGgaggatTATCCTGAATAACCCGAGGAAGAGAAACGCTCTGTCTCTGCAGATGCTGGAGTCTCTGAGGGAAAACATCCTGACAGACGCCGACAATCCAGAGCTGCATGTCATTATCATATCA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061201-12 Predicted to enable catalytic activity. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ECHDC3 (enoyl-CoA hydratase domain containing 3).

Ensembl:

ensembl_id ENSDART00000159128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057305 lncRNA downstream 148668 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 167231 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 185048 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 211817 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 213767 71463 ~ 72658 (-) True XLOC_028358
TCONS_00055106 lncRNA upstream 42346 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 106126 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 395536 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 414187 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 436405 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055103 mRNA downstream 9344 269443 ~ 277081 (-) True XLOC_028369
TCONS_00055102 mRNA downstream 45688 233812 ~ 240737 (-) True XLOC_028368
TCONS_00055101 mRNA downstream 74711 190547 ~ 211714 (-) True XLOC_028367
TCONS_00055100 mRNA downstream 92663 184863 ~ 193762 (-) True XLOC_028366
TCONS_00055099 mRNA downstream 94689 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055105 mRNA upstream 37603 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055107 mRNA upstream 99010 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA upstream 99718 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055109 mRNA upstream 389285 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055113 mRNA upstream 450114 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055111 other upstream 395627 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 516722 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 649804 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1773099 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2387681 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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