RNA id: TU2355247


Basic Information

Item Value
RNA id TU2355247
length 879
lncRNA type intronic
GC content 0.42
exon number 4
gene id G2059416
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18549765 ~ 18551608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatctcactttctatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctcGTTATCCATCTCTCTCGttatcaatctctctctttctattcatctctctttctatccatctctctttctatccatctctctctttctatccatctctctctttctatccatctctctttctatccatctctctctttatcaatctctctttctatccatctctctctttatatccatctctctttatatccatctctctctttatatccatctctctttatatccatctctctttatatccatctctctctttatccatctctctttatatccatctctctctttatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctttctatccatccctctctttctatccatctctctctcgcttcgtCTCCTCGTCGTGAGTGCTTTCTCATTTTCCATCGCCTATTCATTTTTAAGGAGGGAGTGTGTTGGAGTGCGGTGGCGTGCATTAGCGTTACTCTGCTCTGCCTCTAGCTAGGTGTAAAAAATACCATTACAGCAGCCGGCTGTGGGGCCATCCGGATCGATCCATTATGGAGCTGAGAGGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355202 lncRNA upstream 39836 18508219 ~ 18509929 (+) True G2059380
TU2355109 lncRNA upstream 170055 18379063 ~ 18379710 (+) True G2059292
TU2355106 lncRNA upstream 170780 18369347 ~ 18378985 (+) False LOC118944759
TU2355107 lncRNA upstream 170780 18369347 ~ 18378985 (+) True LOC118944759
TU2354963 lncRNA upstream 289124 18260387 ~ 18260641 (+) True G2059153
TU2355447 lncRNA downstream 301958 18853566 ~ 18855198 (+) True G2059594
TU2355466 lncRNA downstream 371478 18923086 ~ 18923594 (+) True G2059610
TU2355526 lncRNA downstream 414714 18966322 ~ 18966840 (+) True G2059661
TU2355514 lncRNA downstream 437673 18989281 ~ 18991625 (+) False LOC110507689
TU2355516 lncRNA downstream 437733 18989341 ~ 18991625 (+) True LOC110507689
XR_005040053.1 mRNA upstream 171251 18369263 ~ 18378514 (+) False LOC118944759
XM_036965144.1 mRNA upstream 306539 18200831 ~ 18243226 (+) False brip1
XM_036965143.1 mRNA upstream 306634 18200831 ~ 18243131 (+) False brip1
XM_021587823.2 mRNA downstream 195587 18747195 ~ 18770034 (+) True LOC110507678
XM_021587824.2 mRNA downstream 219218 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA downstream 219219 18770827 ~ 18789238 (+) True LOC110507679
XM_036965816.1 mRNA downstream 237944 18789552 ~ 18796852 (+) False LOC110507680
XM_036965817.1 mRNA downstream 237944 18789552 ~ 18796852 (+) True LOC110507680
TU2353626 other upstream 673933 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 963841 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 983381 17555504 ~ 17566384 (+) False G2057788
TU2355275 other downstream 19491 18571099 ~ 18594842 (+) False G2059435
TU2355276 other downstream 19491 18571099 ~ 18592997 (+) True G2059435
TU2355582 other downstream 540339 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 641849 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1506635 20058243 ~ 20059968 (+) True LOC110507725

Expression Profile