RNA id: TU2355275


Basic Information

Item Value
RNA id TU2355275
length 550
RNA type TUCP
GC content 0.43
exon number 4
gene id G2059435
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18571099 ~ 18594842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatgtgtgtgtgtgtgtgtgtgtcagtgtgtgttgtacCATACGTTTGtcagaggaagtactgtatgtgtgtgtgtgtcagtgtgtgttgtacCATACGTTTGTCagagggagtactgtatgtgtgtgtgtgtgttgtactatacgtttgtcagagggagtactgtatgtgtgtgtgtgttgtactatacgtttgtcagaggaagtactgtatgtgtgtgtgtgtgtcagtgtgtgttgtactatacgtttgtcagaggaagtactgtatgtgtgtgtgtgtgtcagtgtgtgttgtactatacgtttgtcagagggagtactgtatgtgtgtgttgtactatacgtttgtcagagggagtactgtatgtgtgtgtgtgtgttgtactatacgTTTGTCAGAGcgagtactgtatgtgtgtgtgtgttgtactatacgtttgtcagagggagtactgtatgtgtgtgtgtgtgttgtactatacgtttgtcagagggagtactgtatgtgtgtgtgtgtgttgtactatacgTTTGTCAGAGGGagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355244 lncRNA upstream 19491 18549765 ~ 18551608 (+) False G2059416
TU2355247 lncRNA upstream 19491 18549765 ~ 18551608 (+) False G2059416
TU2355252 lncRNA upstream 19491 18549765 ~ 18551608 (+) False G2059416
TU2355254 lncRNA upstream 19491 18549765 ~ 18551608 (+) True G2059416
TU2355202 lncRNA upstream 61170 18508219 ~ 18509929 (+) True G2059380
TU2355447 lncRNA downstream 258724 18853566 ~ 18855198 (+) True G2059594
TU2355466 lncRNA downstream 328244 18923086 ~ 18923594 (+) True G2059610
TU2355526 lncRNA downstream 371480 18966322 ~ 18966840 (+) True G2059661
TU2355514 lncRNA downstream 394439 18989281 ~ 18991625 (+) False LOC110507689
TU2355516 lncRNA downstream 394499 18989341 ~ 18991625 (+) True LOC110507689
XR_005040053.1 mRNA upstream 192585 18369263 ~ 18378514 (+) False LOC118944759
XM_036965144.1 mRNA upstream 327873 18200831 ~ 18243226 (+) False brip1
XM_036965141.1 mRNA upstream 327968 18200796 ~ 18243131 (+) False brip1
XM_036965139.1 mRNA upstream 327968 18200831 ~ 18243131 (+) False brip1
XM_036965143.1 mRNA upstream 327968 18200831 ~ 18243131 (+) False brip1
XM_021587823.2 mRNA downstream 152353 18747195 ~ 18770034 (+) True LOC110507678
XM_021587824.2 mRNA downstream 175984 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA downstream 175985 18770827 ~ 18789238 (+) True LOC110507679
XM_036965816.1 mRNA downstream 194710 18789552 ~ 18796852 (+) False LOC110507680
XM_036965817.1 mRNA downstream 194710 18789552 ~ 18796852 (+) True LOC110507680
TU2353626 other upstream 695267 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 985175 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 1004715 17555504 ~ 17566384 (+) False G2057788
TU2353443 other upstream 1004715 17555504 ~ 17566384 (+) False G2057788
TU2353453 other upstream 1004715 17555504 ~ 17566384 (+) True G2057788
TU2355582 other downstream 497105 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 598615 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1463401 20058243 ~ 20059968 (+) True LOC110507725
TU2357309 other downstream 1710540 20305382 ~ 20306608 (+) True G2061226
TU2357640 other downstream 2110087 20704929 ~ 20707420 (+) True LOC110507744

Expression Profile