RNA id: TCONS_00057975


Basic Information

Item Value
RNA id TCONS_00057975
length 374
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_028373
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 393551 ~ 396819 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGTCTAAAACACACAGGATCAGATGTGGCTCCTTGAATTCACTTTCAGAGGCACGTCAACACACAGCCCATGAAAGGCGACAAGGTTCCGTTTGCTTTGCGCACACATAGCAAGGGCAAGACATGATGGAGAGATGACCTTTGGGTTTGTGTGCTCGTATTATTAAATCCTGCAACACTTTGAGGTTCCTGTACAATCAGCTTACACTGATATAAGACAGCCTGAATAAATCACAGCTCCTGGAATCTTCTACTCAGTTATTTCACACACTCGACTGGTGTTATGAGGTGAATTTAGTATTGGTATTTGTAAACAAGCTCAAACATGCAGAATTATCCCACTTGCTCTACTGTAATCAATCAATTCACAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055106 lncRNA downstream 62838 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057305 lncRNA downstream 255794 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 274357 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 292174 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 318943 73430 ~ 74608 (-) True XLOC_028359
TCONS_00055110 lncRNA upstream 286142 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 304793 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 327011 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055114 lncRNA upstream 354471 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055116 lncRNA upstream 367577 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055107 mRNA downstream 3109 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 3120 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 62803 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055104 mRNA downstream 106126 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055103 mRNA downstream 116470 269443 ~ 277081 (-) True XLOC_028369
TCONS_00055109 mRNA upstream 279891 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055113 mRNA upstream 340720 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055115 mRNA upstream 367281 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055119 mRNA upstream 386825 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 388483 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055111 other upstream 286233 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 407328 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 540410 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1663705 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2278287 2675106 ~ 2686090 (-) False XLOC_028423