RNA id: TCONS_00055112


Basic Information

Item Value
RNA id TCONS_00055112
length 1178
lncRNA type antisense
GC content 0.46
exon number 6
gene id XLOC_028375
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 701612 ~ 734347 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcAGAGTCACGTGATCAGACACGCAGCAGGTCGCGCGTGCGCAGTACTGGAACGACAGGTCAAGCAGTGGGAGAGCGATGTGTACATCCCAGAAGACGTAAATGGCAGCAAATCTACTGGAGCAGTCCCGGGGATATGGCCAGGCAGCCCAGAAGACATGGAGATGTGTTGAGGGGACCGAGGGCTTTGAGTGGAGCCGGATGCTCGTGAGATGAATGGACAGTTGTATTGTTTGTGCATGTGCGAAGGGAGGAGCTGAGTTCCAGGGCCAATGAGAAGCGAGCGAGGATTGTGGGAAGGAGCCGTCCTATTGGTCAGGATCGTCCGTGCAGCTGCTGCGTAATCAGGAGAGCAGTACTTAAGAGGCATTAGTGCTGGAGCGGCAGCGAAAGCGGCAGCCCTGCGGTGGCAGCCGAGCGGTGTTCATCCCTTGCGGTGTGAAGACCGGCGGGGTAAAGACAAGGCGCGACTCTGCGCGACTCTAACTGCGCGACTCCAACGAGCAGAGGACAACGGCAGAGgATGCATTTAAAGATTGTGCAGCACCACTGATGTGATCCAAAAGCTGTGAAGACATGATGCCAAACATCAACCACCTCAACCACAACACATACAAAGACGTCATGCCAGCCATCTAACACTTGCACAGAAGCCCATCTCGACGCCTCTACAGACTGTGCAACACCATTGATAAGATCCCAGACCTGtcaagagatgatgccaaccatggAACCATCCACACCTTCCTGGAGAAACACAAACCTGTGCTGCAACACTGACCACTGCATGCACTGACAACTTCAACCATCACCACATCACATTACAgttcttgcatttactaacatgaaggaCGAAAAGTACActacagtatttcttcatttgttagtgcaataaataatgttaacaagcatgcattTGGATGTTCATATTGTAAATGTTCGTTATTAAATGTAATACAAGTATTGTTTATAAttacttcatgttagtaaatacaataactaatgacaccttattgtaaagtatgacATCATCACCAAGCAATCAAAAAAATACACCCTGTTTGTATTGTCAGAATAaagattttacaataataaagatTTGTTTTTGGGGTAAATGATCATTACAATTATTACAAGTATAAtatgaatacattaataaatatgaaGACATCTAAAGTA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055110 lncRNA downstream 16179 682961 ~ 685433 (-) False XLOC_028374
TCONS_00057975 lncRNA downstream 304793 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055106 lncRNA downstream 370899 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057305 lncRNA downstream 563855 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 582418 116322 ~ 119194 (-) True XLOC_028362
TCONS_00055114 lncRNA upstream 16943 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055116 lncRNA upstream 30049 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA upstream 34696 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055118 lncRNA upstream 37005 771352 ~ 772392 (-) True XLOC_028378
TCONS_00057976 lncRNA upstream 165615 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055109 mRNA downstream 16200 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 311170 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 311181 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 370864 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055104 mRNA downstream 414187 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055113 mRNA upstream 3192 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055115 mRNA upstream 29753 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055119 mRNA upstream 49297 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 50955 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 52719 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055111 other downstream 16193 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 69800 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 202882 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1326177 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1940759 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3758219 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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