RNA id: TCONS_00057306


Basic Information

Item Value
RNA id TCONS_00057306
length 669
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_028376
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 723830 ~ 732484 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGTTGTGTTTTAAATAGATTAATCAGTCACACtgaaaataagcaaaatatttacataaaatcacttatttaaattaaatagattTAATTTGTAAAACGTAGAGTCACGTGATCAAACACGGCAGCAGGTCGCGCATGCGCAATACTGTAACGACAGAGTCACGTGACCAAACACGGCAGCAGGTCGCGCATGCGCAATACTGTAATGGAGCAGGTGAGTGCATCTCAGCTTTTACCTTTGCTTTAAAGTGACTGATAGAGAGAATCTGCGGTTCCGGTTTGCGTCGTTTTGTTGATGGTTTAAAGCAGCAGCTTATAAACGAGTGTTATGAGCAGATAATGCTCTTTTTAATCTGTCTGATGTCGAGAGATCAAGTGTAATCGTCGAACATTGTTTAAAACACGTGGAACTGGCGTTAATTAGCTGTAATTGTGGAATTTGGCCACAGGAGGGCGCATTTCCTGTAACTGTGATGACGTCACTGGCCCATGAATATATCCTGCttattttataactgtaataaGAGGCAATTCAGTCATATTTTGATGTTATAATCGCGATCGtaacaatatttatcaatatgtggaactTTTTGGATTGGCAGAAGCGGGaaatttataatgtaaaacaggaaaaacgccaggaccattgttattgtttacgtcT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055110 lncRNA downstream 38397 682961 ~ 685433 (-) False XLOC_028374
TCONS_00057975 lncRNA downstream 327011 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055106 lncRNA downstream 393117 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057305 lncRNA downstream 586073 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 604636 116322 ~ 119194 (-) True XLOC_028362
TCONS_00055114 lncRNA upstream 18806 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055116 lncRNA upstream 31912 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA upstream 36559 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055118 lncRNA upstream 38868 771352 ~ 772392 (-) True XLOC_028378
TCONS_00057976 lncRNA upstream 167478 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055109 mRNA downstream 38418 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 333388 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 333399 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 393082 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055104 mRNA downstream 436405 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055113 mRNA upstream 5055 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055115 mRNA upstream 31616 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055119 mRNA upstream 51160 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 52818 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 54582 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055111 other downstream 38411 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 71663 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 204745 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1328040 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1942622 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3760082 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

//