Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055114 |
| length | 641 |
| lncRNA type | retained_intron |
| GC content | 0.56 |
| exon number | 2 |
| gene id | XLOC_028377 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 737539 ~ 760560 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0035611 | protein branching point deglutamylation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051607 | defense response to virus | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0030496 | midbody | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004180 | carboxypeptidase activity | molecular_function |
| GO:0004181 | metallocarboxypeptidase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| GO:0015631 | tubulin binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko01002 | Peptidases and inhibitors |
| id | description |
|---|---|
| ZDB-GENE-040822-29 | Predicted to enable metallocarboxypeptidase activity and tubulin binding activity. Acts upstream of or within chordate embryonic development and cilium assembly. Predicted to be located in several cellular components, including cytosol; midbody; and mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Human ortholog(s) of this gene implicated in retinitis pigmentosa 75. Orthologous to human AGBL5 (AGBL carboxypeptidase 5). |
| ensembl_id | ENSDART00000150276 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055112 | lncRNA | downstream | 16943 | 701612 ~ 734347 (-) | True | XLOC_028375 |
| TCONS_00057306 | lncRNA | downstream | 18806 | 723830 ~ 732484 (-) | True | XLOC_028376 |
| TCONS_00055110 | lncRNA | downstream | 65857 | 682961 ~ 685433 (-) | False | XLOC_028374 |
| TCONS_00057975 | lncRNA | downstream | 354471 | 393551 ~ 396819 (-) | True | XLOC_028373 |
| TCONS_00055106 | lncRNA | downstream | 420577 | 329771 ~ 330713 (-) | True | XLOC_028371 |
| TCONS_00055116 | lncRNA | upstream | 11323 | 764396 ~ 769820 (-) | False | XLOC_028378 |
| TCONS_00055117 | lncRNA | upstream | 15970 | 769043 ~ 769631 (-) | False | XLOC_028378 |
| TCONS_00055118 | lncRNA | upstream | 18279 | 771352 ~ 772392 (-) | True | XLOC_028378 |
| TCONS_00057976 | lncRNA | upstream | 146889 | 899962 ~ 903988 (-) | False | XLOC_028383 |
| TCONS_00057977 | lncRNA | upstream | 146889 | 899962 ~ 904022 (-) | True | XLOC_028383 |
| TCONS_00055109 | mRNA | downstream | 65878 | 676710 ~ 685412 (-) | False | XLOC_028374 |
| TCONS_00055107 | mRNA | downstream | 360848 | 386435 ~ 390442 (-) | False | XLOC_028372 |
| TCONS_00055108 | mRNA | downstream | 360859 | 387143 ~ 390431 (-) | True | XLOC_028372 |
| TCONS_00055105 | mRNA | downstream | 420542 | 325028 ~ 330748 (-) | False | XLOC_028371 |
| TCONS_00055104 | mRNA | downstream | 463865 | 286425 ~ 287425 (-) | True | XLOC_028370 |
| TCONS_00055115 | mRNA | upstream | 11027 | 764100 ~ 779796 (-) | False | XLOC_028378 |
| TCONS_00055119 | mRNA | upstream | 30571 | 783644 ~ 797858 (-) | False | XLOC_028379 |
| TCONS_00055120 | mRNA | upstream | 32229 | 785302 ~ 789645 (-) | False | XLOC_028379 |
| TCONS_00055121 | mRNA | upstream | 33993 | 787066 ~ 797831 (-) | True | XLOC_028379 |
| TCONS_00055122 | mRNA | upstream | 45623 | 798696 ~ 815871 (-) | False | XLOC_028380 |
| TCONS_00055111 | other | downstream | 65871 | 683052 ~ 685419 (-) | True | XLOC_028374 |
| TCONS_00055123 | other | upstream | 51074 | 804147 ~ 808453 (-) | True | XLOC_028380 |
| TCONS_00055131 | other | upstream | 184156 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055166 | other | upstream | 1307451 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055185 | other | upstream | 1922033 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055220 | other | upstream | 3739493 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
