RNA id: TU2357309



Basic Information


Item Value
RNA id TU2357309
length 1227
RNA type TUCP
GC content 0.42
exon number 1
gene id G2061226
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 20305382 ~ 20306608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagttaaTCTTTGCCAtgatcctgactagactcccagtccctgccgctccagtccctccccacagcatgatgctgccaccaccatgcttcaccatagggatggtgccaggtttcctccagatatgatgcctggcattcaggccaaagagttcaaccttggtttcatccgaccagagaatcttgtttctcatggtctgagtcctttaggtgccttttggcaaactccaagcgggatgtcatgtgccttttacggaggagtggcttccgtctggccactctaccataaaggcctgattggtagagtgctgcagagatggttgtccttctggaaggttctcctatctccacaggggagctctagagctctgtcagagttccctgaccaaggtcttcttccttgattgctcagtttgaccgggcggacagctctaggaagagtcttggtggttgcaaactgatggaggccacagtgttcttggggaccttcaatgctgcagacattttttggtatccttcaccagatctgtgcctcgacacaattctgtctcagagctctacagacaattccttcgacctccagGCTTGTTGTTTTTtctatgacatgcactgtcaactgtgggaccttatatagacagatgtgtgcctttccaaatcacgtccaatcaattgaattcaccacaggttgactccaatcaagttgtagaaacatctcaaggatgatcaaacaGGGGTGTacctgatctcaatttcaagtctcatagcaaggggtctgaatacttatgtaaataagatatttcaggtttttatttttaatacatttacaaacatttctaaaaacctgttttcactttgtcattatggggtattgtgtttagattgctaAGGATTTgtatgtatttaatcaattttagaataaggctgtaacgtaacaaaattaggaaaaagtcaagggttctgattactttccgaaggcactgtatgtgctgtaTGGACACTGTAcataaaatacatatatatatatatatatatacagtacatacacttaCACATGTAAACTTTTCATGCACATCATTAAAACATGTAGGGGtagtttcccggacacagattaagccttgtGCTGGACTAAAAAGCAAGATCAATGGAAAATCTCtattgaaagtgctttttagtccagatTTAAGTTAATATTAAGAATAGCCTGAATATTGTCTATGTAAATATTAAaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2357273 lncRNA upstream 179941 20125138 ~ 20125441 (+) True G2061191
TU2357259 lncRNA upstream 193127 20111956 ~ 20112255 (+) True G2061178
TU2357247 lncRNA upstream 209623 20095560 ~ 20095759 (+) True G2061167
TU2357245 lncRNA upstream 218593 20086396 ~ 20086789 (+) True G2061165
TU2357202 lncRNA upstream 222358 20040315 ~ 20083024 (+) False G2061141
TU2357312 lncRNA downstream 123 20306731 ~ 20306831 (+) True G2061229
TU2357394 lncRNA downstream 30144 20336752 ~ 20336957 (+) True G2061310
TU2357421 lncRNA downstream 32602 20339210 ~ 20339466 (+) True G2061323
TU2357423 lncRNA downstream 35087 20341695 ~ 20347787 (+) False G2061325
TU2357424 lncRNA downstream 35087 20341695 ~ 20367442 (+) False G2061325
XM_021587929.2 mRNA upstream 3567 20196348 ~ 20301815 (+) True LOC110507730
XM_021587930.2 mRNA upstream 7271 20194684 ~ 20298111 (+) False LOC110507730
XM_036965480.1 mRNA upstream 7271 20196348 ~ 20298111 (+) False LOC110507730
XM_036964638.1 mRNA upstream 149137 20083569 ~ 20156245 (+) True tyw1
LOC110507119 mRNA upstream 228893 20075573 ~ 20076489 (+) True LOC110507119
XM_021587936.2 mRNA downstream 46739 20353347 ~ 20389568 (+) True flot2b
XM_021587938.2 mRNA downstream 86932 20393540 ~ 20400243 (+) False LOC110507734
XM_036964752.1 mRNA downstream 86932 20393540 ~ 20400243 (+) False LOC110507734
XM_021587939.2 mRNA downstream 87046 20393654 ~ 20400243 (+) True LOC110507734
XM_021587945.2 mRNA downstream 119722 20426330 ~ 20446543 (+) False LOC110507737
TU2357227 other upstream 245414 20058243 ~ 20059968 (+) True LOC110507725
TU2355651 other upstream 1110198 19193457 ~ 19195184 (+) True G2059777
TU2355582 other upstream 1213110 19091947 ~ 19092272 (+) True G2059714
TU2355275 other upstream 1710540 18571099 ~ 18594842 (+) False G2059435
TU2355276 other upstream 1712385 18571099 ~ 18592997 (+) True G2059435
TU2357640 other downstream 398321 20704929 ~ 20707420 (+) True LOC110507744
TU2358606 other downstream 838603 21145211 ~ 21146366 (+) True G2062402
TU2358767 other downstream 973552 21280160 ~ 21281860 (+) True G2062531
TU2358847 other downstream 1116104 21422712 ~ 21423694 (+) False LOC110507128
TU2358849 other downstream 1123532 21430140 ~ 21430969 (+) False LOC110507128

Expression Profile