RNA id: TCONS_00055115


Basic Information

Item Value
RNA id TCONS_00055115
length 2732
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_028378
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 764100 ~ 779796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTCATTGGTCAGGTCCGAACAGTTCTCGAGGAGTTTAGCAGGCTAGCAAGAGTGTTTCCTCGAATATTAAGAttgttacattaatataaaacacattttttagacgataatatctataatatataatcaATACCGCATATCGTTTTTGATGGGCAGGGAttgactgaaaaaaatatatgaaaaggaAAAAGATTTACCAGAGCGACTGATCTCCAGTGAACGTCTTGATCTGGCCGGAAGAGCGCAGAGTGGACGCGCTGGAAACAGGAAACAGTTCCTCTCACGGCAAACAGACGTGGCATAAGAACCGTTGGTTTAATTCGATCAATActgttgatttttaattattgtctGTCTGCTTGAGTTGGACATTATGGCCTCTGGTGTGGGCAAATGGGAGGTGGTGAAGAAAGGGAAGAAAGCGACCAGCAGCTCCAAAACTCAGGACAAGAAATCAGCAAGGAAAGCGCTGAGAGAGGCCAACACTGACAGCAACCACGTGATGTCCGAGACCATATTCGACGGCTTCGAGAAGATGGTGAAGAAGCAGAATAAAGAGCAGGTTCCTCCACCGGTGGAAACCCAGCAGAAGAAACCAAACGCAGGAAAGCAGACCAAAAAACCCCCGGCCAACAGCAGCCCCAAACCCGTCCATTACAAGACTCTGGAGGAGGCGGTCAAAGCCTTGAATATCGCAGAGCTGAAGCAGCAGCTGGAGAAAAGTCAGACTCTGTTTCCTGAGAATCCGTCCATCTGGGTGAAGGATCTGGCTGGATATCTGAACTACAAACTCCCAGCTCCAGACACAGACCCCACACTCAGCAGCTACGCTCACGATTACCCATACTGCCTCGCTGGGAAGGAGCTGAAGGCCATTATTAAGAACCTGCTGGGCAAATGTTCAGACGCGCTGCCCGAGTTCTTTGACCATTGCGTCTTCACCATGCTGAGAGAACAGGACCGACAGCCGAGTGATCCTTTGCACGGCTACAGGATGTGCATTCAGGCTCTCATGCAGGACAAACCCAAAATCGCCACGCTGAACCTCTCGGACCATCTGGAGCTGCTGCGCTCTCATCAGAACCGTCCGCTCAAGTGTCTGACCATCATGTGGGCTCTGGGACAGGCAGGATTCTACGACCTCAGCCAGGGCATCAGAGTCTGGTTGGGAATCATGCTCCCTGTTCTCGGGATGAAGGCTCTCTCCGCATATGCCATCGCTTATCTGGAGCGACTGCTGACTCTTCATGCCAACCTGACCAAAGGCTTCGGGATAATGGGGCCCAAGGAGTTCTTCCCTTTGCTGGACTTTGCTTACATGCCTAAAAACGCTCTTTCACAGAGTCTGCAGGAGCAGTTGTGTCGACTGTACCCACGGATAAAGGTTCTGGCCTTTGGTGCAAAACCTGAATCAACACTGCACACATATTTCCCATCATTCCTGTCACGAGCCACACCCAACTGTCCTGGTGCCATGAAGAAAGAGCTGCTGAGGAGTCTGACGGAGTGTCTGAGCGTGGACAGTCAGAGTCTGAGTGTTTGGAGGCAGCTGTACACCAAACACCTGCCGCAGTCCAGcctTCTGCTCAATCACCTGCTGAAGACCTGGAAAACACTCCCTCTGAAGTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGCTGGCTGTCTGAGAACACGCCATATTATTACTCGAGTGCGGTGACTGCGGTGCGTCCGCTGCTGGAGTACGGACAGGAGTATGTGAAGCTGGCGGTGTTGAAGATCGCACACATGAGCTCAGAGCTGATGCTGTGGATGCAGGAGAACCTGCCGCTGCTGCTGCACTGGATTCACGCCAATACTCCAGAGAGTGTGTTTCAGTTCCTGGAGTTTCTGAAGGGTCTGTTGCTGTTTGTCCATGAGCAGATGATTCTGCCGGCTCTGCATTATCTAAACACAGCACTGCAGCTCGCCTGGAGGAGTCTGCAGGAGTCCTGCAAtggaGAGGTATCTCTGCACTGTTTACAGGATCACGTTCGCTCCTTCACCAACAGCACCTGGATTTACCTGCAGGACGCCACGTCTGCCATCAAGAGCCGAGCGCAGGAGCTGCTGTCCTGAGCCCCAACACTGCGGctcttctttcttctttcttttttttttgtttgtcagtgTGCATGAGATTTTATATCTGTTGTGCTGACGGTTCTGTCTTTTATGCAGATGTTTTTTTCAATGGggtttattttacacaaaaattGCCAATCCAGACtgagttggagagagagagagagagagagagagagacatgttATTTAACATCCCGCTGAACACTGACTACTGAACACTGAAGATGACCACATTACTGAAACACGCACGAGTCCTGGAAGAGGAGCTGATTTCATAGTTtgtaaatgatttatatataaatgaataaaacaatgctGTTCAGTCCTGA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110307-2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

Ensembl:

ensembl_id ENSDART00000128743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055114 lncRNA downstream 11027 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 29753 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA downstream 31616 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055110 lncRNA downstream 78667 682961 ~ 685433 (-) False XLOC_028374
TCONS_00057975 lncRNA downstream 367281 393551 ~ 396819 (-) True XLOC_028373
TCONS_00057976 lncRNA upstream 120166 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 120166 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 139956 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 231164 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 242520 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055113 mRNA downstream 3540 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 78688 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 373658 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 373669 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 433352 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055119 mRNA upstream 3848 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 5506 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 7270 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055122 mRNA upstream 18900 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 39132 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055111 other downstream 78681 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 24351 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 157433 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1280728 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1895310 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3712770 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00644494_00651464.mRNA False 2573 mRNA 0.52 17 CI01000068 643982 ~ 651464 (-)
bowfin (Amia calva) AMCG00004298 True 3645 mRNA 0.47 17 CM030121.1 42029377 ~ 42045091 (+)