RNA id: TCONS_00055116


Basic Information

Item Value
RNA id TCONS_00055116
length 910
lncRNA type retained_intron
GC content 0.55
exon number 6
gene id XLOC_028378
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 764100 ~ 779796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAACAACATCAGtccctgctctctctctctctctctctctctctctctttcagcctTCTGCTCAATCACCTGCTGAAGACCTGGAAAACACTCCCTCTGAAGTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGCTGGCTGTCTGAGAACACGCCATATTATTACTCGAGTGCGGTGACTGCGGTGCGTCCGCTGCTGGAGTACGGACAGGAGTATGTGAAGCTGGCGGTGTTGAAGATCGCACACATGAGCTCAGAGCTGATGCTGTGGATGCAGGAGAACCTGCCGCTGCTGCTGCACTGGATTCACGCCAATACTCCAGAGAGTGTGTTTCAGTTCCTGGAGTTTCTGAAGGGTCTGTTGCTGTTTGTCCATGAGCAGATGATTCTGCCGGCTCTGCATTATCTAAACACAGCACTGCAGCTCGCCTGGAGGAGTCTGCAGGAGTCCTGCAAtggaGAGGTATCTCTGCACTGTTTACAGGATCACGTTCGCTCCTTCACCAACAGCACCTGGATTTACCTGCAGGACGCCACGTCTGCCATCAAGAGCCGAGCGCAGGAGCTGCTGTCCTGAGCCCCAACACTGCGGctcttctttcttctttcttttttttt

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110307-2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

Ensembl:

ensembl_id ENSDART00000150812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055114 lncRNA downstream 11323 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 30049 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA downstream 31912 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055110 lncRNA downstream 78963 682961 ~ 685433 (-) False XLOC_028374
TCONS_00057975 lncRNA downstream 367577 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055118 lncRNA upstream 1532 771352 ~ 772392 (-) True XLOC_028378
TCONS_00057976 lncRNA upstream 130142 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 130142 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 149932 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 241140 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00055113 mRNA downstream 3836 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 78984 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 373954 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 373965 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 433648 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055119 mRNA upstream 13824 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 15482 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 17246 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055122 mRNA upstream 28876 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 49108 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055111 other downstream 78977 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 34327 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 167409 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1290704 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1905286 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3722746 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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