RNA id: TCONS_00055117


Basic Information

Item Value
RNA id TCONS_00055117
length 445
lncRNA type retained_intron
GC content 0.51
exon number 2
gene id XLOC_028378
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 764100 ~ 779796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGGTCAGACTACAGCACACAGGATTTATTCTGACTACAGTACAGGGTTATTATAACTCAGCAGGTCAATGTTATCAGCTTTCTTAAAGTACCAATGAAATCCAAACTAaccatatttttttg

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110307-2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

Ensembl:

ensembl_id ENSDART00000150594

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055114 lncRNA downstream 15970 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 34696 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA downstream 36559 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055110 lncRNA downstream 83610 682961 ~ 685433 (-) False XLOC_028374
TCONS_00057975 lncRNA downstream 372224 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055118 lncRNA upstream 1721 771352 ~ 772392 (-) True XLOC_028378
TCONS_00057976 lncRNA upstream 130331 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 130331 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 150121 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 241329 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00055113 mRNA downstream 8483 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 83631 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 378601 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 378612 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 438295 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055119 mRNA upstream 14013 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 15671 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 17435 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055122 mRNA upstream 29065 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 49297 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055111 other downstream 83624 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 34516 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 167598 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1290893 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1905475 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3722935 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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